Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181455g00007 ATGTACACCACCAACTTTCAAGTTCCAATTGTATGTACGGATGCACAGGCAAGAGGAAAGAAGAAGCACTTAAAGAGGCTGAAGGCTCCAAAGCACTGGATGCTTGCCAAGCTTGGTGGAGCTTTTGCTCCTAAAGCTAGGGCAGGACCACACAGATTAAGGGAGTGTGTACCACTGATCCTGATTCTAAGGAACAAGCTCAGGTATGCACTTGCATACCGTGAGGTCATTTCCATCCTCATGCAGCGCCATGTTTTGGTTGATTCTAAAGTTAGAACTGATCAGAAATACCCTGCAGGATTCATGGATGTTGTATCTATTCCTAAAACAAATGAGAACTTCAGACTCCTATATGATACCAAGGGCCGTTTTCGCCTGCGCACAATAGGTGAGCATGAAGCAAGGTTCAAGCTATGCAAGGTGCGATCAGTGCAATTAGGCAAAAGGAGCATACCATATCTGAACACATACGATGGAAGAACAATTAGGTACCCAGACCCACTAATCAAAGCCAATGACACCATAAAGTTTGACTTGGAGACTTACAAGATCACAGATTTCATAAAATTCGAAGTTGGGAACGTTGTGATGGTGACTGGTGGAAGGAACAGAGGGAGGGTTGGGATATTGAAGAAAAGGGAAAGGCATATGGGAACATATGACACAATCTATGTTCAAGATGCTGTTGGTAATGAGTTTGCAACAAGGTTGGAGAATGTTTTTATAATTGGGAAAGGACCAAAACCTTGGGTCTCTTTGCCTAAAGACAGAGGTATTAAGTTGAGTATTATTGAAGAGGCTAGGTTGAGGCGTCAGAGAGAAATGGCTGCTGCAAGATCATGA 843 0.433 MYTTNFQVPIVCTDAQARGKKKHLKRLKAPKHWMLAKLGGAFAPKARAGPHRLRECVPLILILRNKLRYALAYREVISILMQRHVLVDSKVRTDQKYPAGFMDVVSIPKTNENFRLLYDTKGRFRLRTIGEHEARFKLCKVRSVQLGKRSIPYLNTYDGRTIRYPDPLIKANDTIKFDLETYKITDFIKFEVGNVVMVTGGRNRGRVGILKKRERHMGTYDTIYVQDAVGNEFATRLENVFIIGKGPKPWVSLPKDRGIKLSIIEEARLRRQREMAAARS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181455g00007 280 CDD S4 74 127 - -
Stsc181455g00007 280 SMART kow_9 189 216 IPR005824 -
Stsc181455g00007 280 FunFam 40S ribosomal protein S4 137 187 - -
Stsc181455g00007 280 Pfam Ribosomal family S4e 110 184 IPR013845 -
Stsc181455g00007 280 ProSitePatterns Ribosomal protein S4e signature. 23 37 IPR018199 -
Stsc181455g00007 280 Gene3D - 190 260 IPR014722 -
Stsc181455g00007 280 Pfam RS4NT (NUC023) domain 18 54 IPR013843 -
Stsc181455g00007 280 PIRSF RPS4a_RPS4e 16 256 IPR000876 GO:0003735|GO:0005840|GO:0006412
Stsc181455g00007 280 FunFam 40S ribosomal protein S4 190 260 - -
Stsc181455g00007 280 CDD KOW_RPS4 190 244 IPR041982 -
Stsc181455g00007 280 Pfam 40S ribosomal protein S4 C-terminus 227 273 IPR032277 -
Stsc181455g00007 280 Gene3D - 137 187 IPR038237 -
Stsc181455g00007 280 Pfam KOW motif 192 225 IPR005824 -
Stsc181455g00007 280 Hamap 30S ribosomal protein S4e [rps4e]. 22 253 IPR000876 GO:0003735|GO:0005840|GO:0006412
Stsc181455g00007 280 Gene3D - 16 132 IPR036986 GO:0003723
Stsc181455g00007 280 FunFam 40S ribosomal protein S4 16 132 - -
Stsc181455g00007 280 PANTHER 30S/40S RIBOSOMAL PROTEIN S4 16 268 IPR000876 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181455g00007 Stsc-Chr181455 44886 47932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181455g00007 17 277 Cytoplasmic Ribosomal Protein Gene Family AT5G58420 75.862 6.23e-153 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181455g00007 K02987 - aof:109847706 433.721