Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181454g00004 ATGGGTCTTTCAAATTACCCATGTGCAGCTGAAGGGGTGATACCCTTAATTGTGATGAACACGGTTATGTCAGTTGCTTTGTTGAAGAACATGTTCAGATCGGTGCTTCAAGCTGTTGGTGCTACCACTTCTTCTTCTTCTTCTTCTTCTTCAACTACCAATACCTATAGTTATTACCCATCATCATATACTAGTTTGTTTCAAGACACAACAACATGTGCAAGTTCTTCTACTACTAGCACTAGGCCAAGAAGAGTGTCCATAACACACTACAAGTCGCTGTGCAGCAAGAAGAAGAGTGTTATGGTGGAGTGTTGTGTGTGTCTGACAAGGTTCGAAGCGAATCAAGAGGTTAGCGAGTTGCCTTGCAAGCATTTCTTCCATACAACTTGCTTAGACAAATGGTTTGATAACAGACACCCCACTTGCCCTTTGTGCCGTTCTTTCTCATAG 453 0.4238 MGLSNYPCAAEGVIPLIVMNTVMSVALLKNMFRSVLQAVGATTSSSSSSSSTTNTYSYYPSSYTSLFQDTTTCASSSTTSTRPRRVSITHYKSLCSKKKSVMVECCVCLTRFEANQEVSELPCKHFFHTTCLDKWFDNRHPTCPLCRSFS 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181454g00004 150 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Stsc181454g00004 150 SMART ring_2 105 146 IPR001841 -
Stsc181454g00004 150 Pfam Ring finger domain 104 147 IPR001841 -
Stsc181454g00004 150 SUPERFAMILY RING/U-box 104 148 - -
Stsc181454g00004 150 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 149 IPR013083 -
Stsc181454g00004 150 PANTHER - 1 148 IPR044249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181454g00004 Stsc-Chr181454 24301 24753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181454g00004 1 148 C3H Transcription Factor Family AT2G04240 39.865 1.71e-27 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181454g00004 K16285 - gmx:100811790 157.532