Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181453g00001 ATGGCTATTCATGCAAAATCTGATGAAGGAATTCTTGAGAATGTTTGGGCTAAAATTATCAGCAGTGATGACAGAGCATGTCATGTATCATCAACAGAATCTTTCAATAATGGAAAGGACGAGTCGTCAATGAAACTCCTGGAAAGGCTCCCAAGTTTGGGAAGATGGATTTCTATGGGAGCAGAATTTTGGGAAGAAATCTTAGATGATGTTCTTCTACAAGCTACAACCAATAGTAATAATAATAATGATGACAATGCAGGAAAAGAAGCAGAAGAAGAAGATAGTACTATTGTGGCCATCGATGGAGGTGATGATGCAAAATCCAAGAAGAAGATAGAAGTAATTAAGGCAAAGCACTACAGGGGAGTAAGGAGAAGGCCATGGGGTAAGTATGCTGCAGAGATTAGAGATTCATCCAAGAAAGGTGCCAGATTGTGGCTTGGGACATTCGACACGGCTGAAGAAGCGGCTTTGGCTTATGACAAAGCCGCTTTGAGAATTCGAGGTCCAAAGACACGTCTCAATTTCCCACACCACAATCATAGTAATGAAGATACTACAGAAAATTGTTGCCATGTGGAGATGAGAAGGTCGCGCCGCCGTGGAAGGGAAGAGTTTGAAGATGTGATGGTGATGAATAATGAAGAGCAACCTGCAACCAAGAAAATGGCAAGCTTGGAAAGGATGATGGATAATGAGCTTGAAGTTCTTGTGTTACAAGGATTCGGAAATGTTTATTTGGAAGACTTAATTTCTTCTCTGTGA 768 0.4102 MAIHAKSDEGILENVWAKIISSDDRACHVSSTESFNNGKDESSMKLLERLPSLGRWISMGAEFWEEILDDVLLQATTNSNNNNDDNAGKEAEEEDSTIVAIDGGDDAKSKKKIEVIKAKHYRGVRRRPWGKYAAEIRDSSKKGARLWLGTFDTAEEAALAYDKAALRIRGPKTRLNFPHHNHSNEDTTENCCHVEMRRSRRRGREEFEDVMVMNNEEQPATKKMASLERMMDNELEVLVLQGFGNVYLEDLISSL 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181453g00001 255 SUPERFAMILY DNA-binding domain 120 179 IPR016177 GO:0003677
Stsc181453g00001 255 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Stsc181453g00001 255 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Stsc181453g00001 255 Gene3D AP2/ERF domain 119 179 IPR036955 GO:0003700|GO:0006355
Stsc181453g00001 255 PANTHER DNA-BINDING DOMAIN 84 214 IPR044808 GO:0003700|GO:0009873
Stsc181453g00001 255 Pfam AP2 domain 120 170 IPR001471 GO:0003700|GO:0006355
Stsc181453g00001 255 CDD AP2 119 180 IPR001471 GO:0003700|GO:0006355
Stsc181453g00001 255 FunFam Ethylene-responsive transcription factor 2 119 179 - -
Stsc181453g00001 255 MobiDBLite consensus disorder prediction 79 103 - -
Stsc181453g00001 255 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Stsc181453g00001 255 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181453g00001 Stsc-Chr181453 1365 2132 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181453g00001 119 212 AP2-EREBP Transcription Factor Family AT5G51190 56.383 4.79e-31 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc181453g00001 AP2 7.2e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181453g00001 - - gmx:100820226 216.853