Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181449g00004 ATGATGGAGGAGGAGCAGCCTCAGCCTCACCACCATCAAAATGGGATCCGCAATAAACCTAATTTCCCACTCCAACTCTTAAACGATGATCTTCAACAACAACCACCGCCTCCTTCAGATCATGCACCCGCTCCCGCTCCCAAGAAGCTCCCGCCAAAGCGACCTTCTACTAAAGACAGGCACACCAAGGTCGACGGTCGCGGCCGACGCATCCGTATGCCCGCCGCCGCTGCTGCCAGGGTCTTCCAGCTCACAAGGGAGCTCGGCCACAAGTCTGACGGTGAAACCATCGAGTGGCTCCTCCAGCAGGCTGAGCCCTCCGTTATCGCCGCCACTGGAACCGGTACCATCCCTGCAAACTTCACTTCGCTGAACATCACGCTCCGAAGCTCAGGATCCACCCTATCTTCCCCCTCTCACTACTTCAGAGGCGCCACTGCCACTGCTACACCGTATCTCAGTCACGCAGCCAGCTTCTCCTCCGCCAGGAGCCGCAGTGAGTGGGTGAGGAACGTGGCGGTGGAAGATTATTCTAGAAGACTCATGTTCTCCGGCGGTGACAATAGTAATAATAATAATAATAACAACAACTCTGCTTCTGATACGAATACTGTTTTGAATTTCAACAATAACGTGGTTAATGATATTATGCAAAGCAAGCAAGAGGCTCGGGAAGTGTCCGGTAGCGGTGATGGTGCCGGCGGAGGGGAGAGTTTAGGAAGGAAGAGAAGGCAAGAGGAGGTGTTCCCACAGCACCAGGGTACTCAGATGATGGGAAGTTATTTGTTACAGTCGAGTTCGGGCTCAATTCCGGCCAGTCATGCTTCTATTCCGGCGACTTTTTGGATGATGGGCGGAGGTGGAGGTGGTGGTGGCAGCGGTGGCGGTGGTAATAGTGGCAGTGATCCATTTTGGGCAATTCCAACTGTTGGTAACAATAGTAGCATGTATAAAGGGGGTATGTCTGGTGGCGGCGGCGGTGGCAACGGTGGCGGCGGCATTCATTTCATGAATTTTGGTTCTCCAATGGCTCTATTGCAAGCTCAACAATTAGGAAGCGGCGGTGCAGTGCTGAGTGAAAGTAACCTGGGAATGCTTGCAGCACTTAATGCATATAGGCCTATTATGGCTAACGGCGGCAGCGTTCCGGAGTCGCCTGGGAGTGGCGGTCAACATTCACAGCACGGAGGAGATGAAGAAAGTCAACGTTAG 1212 0.533 MMEEEQPQPHHHQNGIRNKPNFPLQLLNDDLQQQPPPPSDHAPAPAPKKLPPKRPSTKDRHTKVDGRGRRIRMPAAAAARVFQLTRELGHKSDGETIEWLLQQAEPSVIAATGTGTIPANFTSLNITLRSSGSTLSSPSHYFRGATATATPYLSHAASFSSARSRSEWVRNVAVEDYSRRLMFSGGDNSNNNNNNNNSASDTNTVLNFNNNVVNDIMQSKQEAREVSGSGDGAGGGESLGRKRRQEEVFPQHQGTQMMGSYLLQSSSGSIPASHASIPATFWMMGGGGGGGGSGGGGNSGSDPFWAIPTVGNNSSMYKGGMSGGGGGGNGGGGIHFMNFGSPMALLQAQQLGSGGAVLSESNLGMLAALNAYRPIMANGGSVPESPGSGGQHSQHGGDEESQR 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181449g00004 403 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 43 392 IPR005333 GO:0003700
Stsc181449g00004 403 MobiDBLite consensus disorder prediction 184 205 - -
Stsc181449g00004 403 MobiDBLite consensus disorder prediction 377 403 - -
Stsc181449g00004 403 ProSiteProfiles TCP domain profile. 57 111 IPR017887 -
Stsc181449g00004 403 MobiDBLite consensus disorder prediction 36 51 - -
Stsc181449g00004 403 MobiDBLite consensus disorder prediction 13 35 - -
Stsc181449g00004 403 MobiDBLite consensus disorder prediction 1 71 - -
Stsc181449g00004 403 MobiDBLite consensus disorder prediction 220 244 - -
Stsc181449g00004 403 Pfam TCP family transcription factor 56 221 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181449g00004 Stsc-Chr181449 20046 21816 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181449g00004 46 350 TCP Transcription Factor Family AT3G47620 44.940 8.83e-54 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Stsc181449g00004 TCP 4.5e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181449g00004 - - aip:107633962 452.21