Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181449g00002 ATGGCTGATCCTCAGAGAGCTAGTCCTGTTGAGAGGGATATAGAGCAGGCACTTACATCGCTTAAAAAAGGATCATATCTGCTAAAGTATGGGCGAAGAGGGAAGCCGAAGTTCTGCCCATTTAGGCTTTCCAATGCAACATTTCAGCGGTATCCTCGGCCTGAAAAAGAATATCAGTCGTTTTCCCTTATATACAATGATAGATCCTTGGATTTGATATGTAAGGACAAAGAGGAGGCTGAGATATGGTTTGTTGGTCTTAAGGCGTTAGTAACTCGAGGTAATAGCAACAGTCAAACGTGGAAATTCGAACCAAGTTGTGAAAGTCCATATCCTGGAAGTCCCTGTGCTGGCACACGCAAATCTGCTCCATCAAGTTCACCATTTGACCCCAGATATACCAATGGAGTTGCTTCGGACAATTCTAATCAAAATAGATGGGTAAAGGCTTTCTCGGAAATAATTTCTTATACTGCAGCTAACAAGAGTTCAATTCAAGCCGAGCCAATTGCAAATTCCGCTTTATCTCCTGGGTCTGTGGATGAATCAAATAATCGAAACTCTGCATCTGAGACAGTTCGAGTTAGTTTATCCAGTGTTGTTAGTTCATCTAGCCATGGTTCTTGTCATGAGGATTTTGAAGCCTTAGGTGATGTTTTTATTTGGGGTGAAGGTATCGGTGATGGAATTCTTGGTGGTGGTATACGTAGAGTTGGAGCCGTATCCAATTCTGAGATGGATGCTTTCCTCCCTAAGGCTTTGGAATCAAAAGTAGTTCTAGATGTTCATAGTATTGGTTGTGGCTACAAACATGCTGTTCTAGTTACCAAGCAAGGAGAAATATTTAGTTGGGGAGAGGAGTCAGGAGGTAGGCTTGGACATGGTGTAGAAGTGGATGTTCTTCACCCTAAGCCCATTGAGACTCTTAGTGGCAGTAATATAGAATTAGTAGCATGTGGAGAATATCATAGTTGTGCTGTTACATATTCTGGGGATCTTTATACTTGGGGTGATGGTACTCACAACTCTGGCTTGCTTGGGCATGAAAACAATGTCAGTCATTGGATTCCTAAGAAAGTAGGTGGTAGCCTGGAGGGTTTACATGTATCATATGTGTCATGTGGCCCTTGGCACACAGCTATTGTTACATCAGCTGGACAGTTGTTTACATTTGGAGATGGAACTTTTGGCGCCTTAGGCCATGGAGATCACAATAGCATAAATATTCCTAGAGAAGTGGAAACTTTGAAAGGGTTGAGAACAACCAGGGCTTCCTGTGGTGTTTGGCACACTGCTGCAATTGTTGAGGTAACACATGAATCTAAANNNNNNNNNNTCACCTGGGGTGATGGAGATAAATTGCAACTTGGACATGCTGGTAGTGAACCTAAACTAGTTCCTGAGCGTGTGATTGCATTAGATAATGAAAACATTTGTCGAGTGGCTTGTGGCCACAGTCTTACAATTGCTTTGACAATCTCAGGACATGTATATACAATGGGCAGTACAGCTTATGGACAACTTGGTTGTCCTGCAGCTGACGGGAAAGTCCCTACACGAGTTAAAGATCAACTTGCTGACTGTTTTGTGGAAGATATTGCTTGTGGTTCTTATCATGTTGCAGTCCTAACTTCAAAAGCAGAGGTTTATACTTGGGGAAAAGGCTTGAATGGGCAATTAGGTCATGGAGACAATGATCACCGGAATAAACCCACACTTGTTCAGTTTTTGAAAGACAAGCAAGTGAAGACCGTTGTTTGTGGTTCAAACTTCACTGCTGTTGTATGTATTCATAAATGGGTATCAAGTACAGACCATTCTCTATGTTCTGGTTGTCGTAATCCATTTGGATTCATAAGAAAACGTCATAATTGTTACAACTGTGGACTTGTTTTTTGCAAAGGATGCACAAACAAGAAATCTACAAAAGCCTCCCTTGCTCCAGATTCCAACAAGGCATATCGGGTTTGCGATGATTGTTACTCTAAACTTAGGAAATCTTCAGAAACAGTTCCCTTGGTGCAAACTCCTAGCTTGAGAAGTGTAAGTTTGCATGACAACAGTAAGGTCACTAAATTACAGGAAAAGCTGTTGAGGCTTTCATCCTTTGGTTCTTTTACTCATTCAGAAAGAAGTCCGTCAAAGCCTCCAGAATCACACGACACCCATGTTTTTCCGCCTTTGAATGGAAAATTGCATGTGGGAATTTATGGTCCTTTAAAATCATCAAATACTCCTTTTCTAGTATCTAAGAATCACCTTTCAGTTCTTGAGCCAACTGCAAGAATCTCTTGCCAATCAACATCACCAGTTTCTTCAAAGTGTAGTCCACGAAAATCTTGTGAAGATAACCATGATGATCCAAAGCTCAAAAATGACATTCTAACTCAAGAAGTCATAGCTTTAAGGGCACAGGTTGAAGAGCTTACTCTTAAGTCAAAAAGTCTAGAGGCTGAACTCGAGAGAACATCTCAGCAATTGAAGCAAGTGACAGCAGTAGCTGCAGATGAAGCTGAAAAGTGTAAATCTGCTAAAGAGGTTATAAAGTCATTGACTGCTCAGTTGAAGGAAATCGTGCAAGGACCTCCAAAAGGGCATAAAGCGAATGCTGACACCATAGTAGCTTCCTATGCTGAAACCACTAATAACATTCAAGATCTATCCGTAGAAGAGAGCCATATAAGAAACACTATCACTCATGAAAAGGAATCCAACAGCAATACAGCAAATAGAACATTACCTAATGGTGCCAAAGGACAAAGTGGAAAGGCAGAGCGGGTGGTACAGGATGAACCGGGTGTGTACATAACTTTGTCACCGCTGCCAGGTGGAGGTAATGAACTTAAGCGTGTTCGCTTCAGTCGGAGGCATTTCACAGAAGAAGAAGCTGAGAAGTGGTGGGCTGAAAATGGAGTCAAAGTATTGGATCGGCATAACATAGTTTCTTCATAG 2952 0.4157 MADPQRASPVERDIEQALTSLKKGSYLLKYGRRGKPKFCPFRLSNATFQRYPRPEKEYQSFSLIYNDRSLDLICKDKEEAEIWFVGLKALVTRGNSNSQTWKFEPSCESPYPGSPCAGTRKSAPSSSPFDPRYTNGVASDNSNQNRWVKAFSEIISYTAANKSSIQAEPIANSALSPGSVDESNNRNSASETVRVSLSSVVSSSSHGSCHEDFEALGDVFIWGEGIGDGILGGGIRRVGAVSNSEMDAFLPKALESKVVLDVHSIGCGYKHAVLVTKQGEIFSWGEESGGRLGHGVEVDVLHPKPIETLSGSNIELVACGEYHSCAVTYSGDLYTWGDGTHNSGLLGHENNVSHWIPKKVGGSLEGLHVSYVSCGPWHTAIVTSAGQLFTFGDGTFGALGHGDHNSINIPREVETLKGLRTTRASCGVWHTAAIVEVTHESKXXXXTWGDGDKLQLGHAGSEPKLVPERVIALDNENICRVACGHSLTIALTISGHVYTMGSTAYGQLGCPAADGKVPTRVKDQLADCFVEDIACGSYHVAVLTSKAEVYTWGKGLNGQLGHGDNDHRNKPTLVQFLKDKQVKTVVCGSNFTAVVCIHKWVSSTDHSLCSGCRNPFGFIRKRHNCYNCGLVFCKGCTNKKSTKASLAPDSNKAYRVCDDCYSKLRKSSETVPLVQTPSLRSVSLHDNSKVTKLQEKLLRLSSFGSFTHSERSPSKPPESHDTHVFPPLNGKLHVGIYGPLKSSNTPFLVSKNHLSVLEPTARISCQSTSPVSSKCSPRKSCEDNHDDPKLKNDILTQEVIALRAQVEELTLKSKSLEAELERTSQQLKQVTAVAADEAEKCKSAKEVIKSLTAQLKEIVQGPPKGHKANADTIVASYAETTNNIQDLSVEESHIRNTITHEKESNSNTANRTLPNGAKGQSGKAERVVQDEPGVYITLSPLPGGGNELKRVRFSRRHFTEEEAEKWWAENGVKVLDRHNIVSS 983
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181449g00002 983 SUPERFAMILY PH domain-like 13 91 - -
Stsc181449g00002 983 CDD FYVE_like_SF 609 661 - -
Stsc181449g00002 983 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 265 275 IPR000408 -
Stsc181449g00002 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 443 494 IPR000408 -
Stsc181449g00002 983 Pfam FYVE zinc finger 599 665 IPR000306 GO:0046872
Stsc181449g00002 983 MobiDBLite consensus disorder prediction 114 140 - -
Stsc181449g00002 983 Pfam Regulator of chromosome condensation (RCC1) repeat 494 543 IPR000408 -
Stsc181449g00002 983 Pfam Regulator of chromosome condensation (RCC1) repeat 386 434 IPR000408 -
Stsc181449g00002 983 Pfam Regulator of chromosome condensation (RCC1) repeat 330 381 IPR000408 -
Stsc181449g00002 983 Pfam Regulator of chromosome condensation (RCC1) repeat 548 595 IPR000408 -
Stsc181449g00002 983 Pfam Regulator of chromosome condensation (RCC1) repeat 279 327 IPR000408 -
Stsc181449g00002 983 Pfam Regulator of chromosome condensation (RCC1) repeat 447 491 IPR000408 -
Stsc181449g00002 983 SUPERFAMILY FYVE/PHD zinc finger 599 673 IPR011011 -
Stsc181449g00002 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 217 278 IPR000408 -
Stsc181449g00002 983 Coils Coil 792 854 - -
Stsc181449g00002 983 CDD PH_PLC_plant-like 12 92 - -
Stsc181449g00002 983 Pfam Transcription factor BRX N-terminal domain 836 859 IPR027988 -
Stsc181449g00002 983 FunFam PH, RCC1 and FYVE domains-containing protein 1 188 439 - -
Stsc181449g00002 983 Gene3D - 442 612 IPR009091 -
Stsc181449g00002 983 ProSiteProfiles BRX domain profile. 924 979 IPR013591 -
Stsc181449g00002 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 331 385 IPR000408 -
Stsc181449g00002 983 Pfam Transcription factor regulating root and shoot growth via Pin3 924 978 IPR013591 -
Stsc181449g00002 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 495 546 IPR000408 -
Stsc181449g00002 983 MobiDBLite consensus disorder prediction 898 926 - -
Stsc181449g00002 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 279 330 IPR000408 -
Stsc181449g00002 983 SMART fyve_4 595 666 IPR000306 GO:0046872
Stsc181449g00002 983 MobiDBLite consensus disorder prediction 119 140 - -
Stsc181449g00002 983 Gene3D - 138 341 IPR009091 -
Stsc181449g00002 983 Gene3D - 342 441 IPR009091 -
Stsc181449g00002 983 MobiDBLite consensus disorder prediction 901 917 - -
Stsc181449g00002 983 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 42 854 - -
Stsc181449g00002 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 386 437 IPR000408 -
Stsc181449g00002 983 MobiDBLite consensus disorder prediction 707 726 - -
Stsc181449g00002 983 PRINTS Chromosome condensation regulator RCC1 signature 281 297 IPR000408 -
Stsc181449g00002 983 PRINTS Chromosome condensation regulator RCC1 signature 388 402 IPR000408 -
Stsc181449g00002 983 PRINTS Chromosome condensation regulator RCC1 signature 331 347 IPR000408 -
Stsc181449g00002 983 PRINTS Chromosome condensation regulator RCC1 signature 372 388 IPR000408 -
Stsc181449g00002 983 PRINTS Chromosome condensation regulator RCC1 signature 484 502 IPR000408 -
Stsc181449g00002 983 PRINTS Chromosome condensation regulator RCC1 signature 542 563 IPR000408 -
Stsc181449g00002 983 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 603 665 IPR017455 -
Stsc181449g00002 983 Gene3D - 44 100 IPR011993 -
Stsc181449g00002 983 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 547 598 IPR000408 -
Stsc181449g00002 983 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 671 IPR013083 -
Stsc181449g00002 983 SUPERFAMILY RCC1/BLIP-II 217 600 IPR009091 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181449g00002 Stsc-Chr181449 6511 13157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181449g00002 922 980 Major Intrinsic Protein MIP AT1G31880 49.153 3.67e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181449g00002 - - lang:109355968 1259.97