Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181447g00003 ATGGAACATATCACCTTCACCAACGGCAACGGCAACGGTAACGGCCACCTCCACCACCACCAGAACCACAATGATGACTCATTCTGCTTGAAAACCACCGCCACCGCCACTATTCCTAACGGTAATGGCAGTGATCCGTTGAATTGGGGAGTGGCGGCAGAGGCACTGAAGGGGAGCCACCTGGATGAGGTGAAGCGCATGGTGGCGGAGTACCGGAAGCCGGTAGTTAAGCTGGGCGGAGAGACCTTGACTATATCTCAGGTGGCTGCGATCGCGGCGCACGACCAAGGTGTGACCGTTGAGCTGTCCGAGTCCGCGAGGGCGGGCGTTAAGGCCAGCAGCGACTGGGTTATGGACAGCATGAACAATGGCACTGACAGTTACGGTGTCACCACCGGCTTCGGTGCCACGTCACACCGCCGGACCAAACAAGGTGGTGCTCTCCAGAAAGAGCTCATCAGGTTTTTGAATGCTGGAATATTCGGCAATGGCACAGAATCAAGCCACACATTGCCACACACGGCAACGAGAGCAGCAATGTTAGTGAGGATCAACACTCTTCTCCAAGGCTACTCAGGCATCAGGTTTGAAATCTTGGAAGCCATAACCAAGCTCTTGAACAACAACATCACACCATGCTTGCCACTCCGCGGCACAATCACGGCGTCCGGGGACCTCGTCCCGCTCTCATACATCGCGGGACTGCTCACCGGAAGGCCCAACTCGAAAGCGGTCGGGCCATCCGGGGAGCTACTAAATGCCAAGCAGGCATTCGAATTGGCGGGAATCACAACCGACTTCTTTGAATTGCAGCCTAAAGAAGGCCTTGCGCTTGTCAACGGCACGGCAGTTGGCTCCGGCCTGGCGTCCATCGTTCTGTTCGAGGCGAACGTTCTTGCGGTTTTGTCGGAAGTTCTTTCGGCTATCTTCGCCGAAGTGATGCAGGGGAAGCCAGAGTTCACCGATCACTTGACTCACAAGCTAAAGCACCACCCTGGCCAGATCGAAGCTGCTGCTATAATGGAACACATCTTGGATGGAAGCTCATACATGAAAGCCGCTAAGAAGCTTCACGAAACGGATCCATTGCAGAAGCCGAAGCAAGATCGCTACGCCCTTAGAACTTCCCCGCAATGGCTTGGTCCTCTTGTGGAAGTGATTAGGTTTTCAACGAAATCGATCGAGAGAGAGATCAACTCTGTTAACGACAATCCGTTGATTGATGTGTCAAGGAACAAGGCCTTGCATGGCGGTAACTTCCAAGGAACTCCGATCGGAGTCTCCATGGATAACACGCGTTTGGCTCTGGCTTCAATAGGAAAGCTCATGTTCGCGCAATTCTCAGAACTGGTTAACGATTTCTACAACAACGGCTTGCCTTCGAATCTCTCTGGTGCTAGGAATCCAAGCTTGGATTACGGTTTCAAAGGCGCGGAAATCGCCATGGCTTCTTACTGCTCTGAGCTTCAATACCTTGCGAACCCGGTAACCAGCCATGTGCAGAGTGCTGAGCAGCACAACCAGGATGTGAACTCTTTGGGCTTGATTTCTTCTAGAAAGACCAATGAAGCTATTGAGATCCTCAAACTTATGTCTTCCACTTTCTTGATGGCGCTTTGCCAAGCCATTGATTTGAGGCATCTGGAGGAGAATTTGAAGAACTCTGTCAAGAACACTGTCAGCTTAGTCGCCAAGAGGACGCTTACCACCGGCGTTAACGGCGAGCTTCATCCTTCAAGATTTTGTGAGAAAGATTTGCTCAAAGTGGTTGATAGGGAGCATGTTTTCGCCTATATTGATGATCCTTGCAGCGCGGTTTACCCCTTGATGCAGAAGCTGAGGCAAGTGCTTGTGGAACACGCTTTGGCCAATCAAGAGACTGAGAAGAACGCAAACACCTCCATCTTCCAGAAGATCGCCACGTTCGAGGACGAGTTGAAGGCCGTGTTGCCAAAGGAGGTTGAAGGTGCTAGAATTGCTTATGAGGGTGGAAACTCAACCATCCCTAACAAGATCAAGGAATGCAGATCCTACCCTCTCTACAGGTTTGTGAGGGAGGAATTGGGAACCGGTTTGCTCACCGGCGAAAAGGTTAGGTCCCCGGGCGAAGAATTCGACAAGGTTTTCACGGCCATGTGCCAGGGGAAGATCATTGATCCTCTTCTCGAATGCCTTGGAGAGTGGAACGGTGCTCCTCTTCCAATTTGTTAG 2211 0.5183 MEHITFTNGNGNGNGHLHHHQNHNDDSFCLKTTATATIPNGNGSDPLNWGVAAEALKGSHLDEVKRMVAEYRKPVVKLGGETLTISQVAAIAAHDQGVTVELSESARAGVKASSDWVMDSMNNGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGTESSHTLPHTATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGELLNAKQAFELAGITTDFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKAAKKLHETDPLQKPKQDRYALRTSPQWLGPLVEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLALASIGKLMFAQFSELVNDFYNNGLPSNLSGARNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTNEAIEILKLMSSTFLMALCQAIDLRHLEENLKNSVKNTVSLVAKRTLTTGVNGELHPSRFCEKDLLKVVDREHVFAYIDDPCSAVYPLMQKLRQVLVEHALANQETEKNANTSIFQKIATFEDELKAVLPKEVEGARIAYEGGNSTIPNKIKECRSYPLYRFVREELGTGLLTGEKVRSPGEEFDKVFTAMCQGKIIDPLLECLGEWNGAPLPIC 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181447g00003 736 MobiDBLite consensus disorder prediction 1 20 - -
Stsc181447g00003 736 MobiDBLite consensus disorder prediction 1 17 - -
Stsc181447g00003 736 FunFam Phenylalanine ammonia-lyase 549 670 - -
Stsc181447g00003 736 Pfam Aromatic amino acid lyase 83 557 IPR001106 -
Stsc181447g00003 736 FunFam Phenylalanine ammonia-lyase 283 591 - -
Stsc181447g00003 736 Gene3D - 549 670 IPR023144 -
Stsc181447g00003 736 FunFam Phenylalanine ammonia-lyase 37 282 - -
Stsc181447g00003 736 NCBIfam phenylalanine ammonia-lyase 45 725 IPR005922 GO:0005737|GO:0006559|GO:0016841
Stsc181447g00003 736 PANTHER HISTIDINE AMMONIA-LYASE 38 736 IPR001106 -
Stsc181447g00003 736 CDD PAL-HAL 81 546 IPR001106 -
Stsc181447g00003 736 SUPERFAMILY L-aspartase-like 45 736 IPR008948 GO:0003824
Stsc181447g00003 736 Coils Coil 610 630 - -
Stsc181447g00003 736 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 218 234 IPR022313 GO:0016841
Stsc181447g00003 736 Gene3D Fumarase/aspartase (Central domain) 283 731 - -
Stsc181447g00003 736 Gene3D - 38 282 IPR024083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181447g00003 Stsc-Chr181447 27998 32221 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181447g00003 42 736 Monolignol Biosynthesis Gene Families AT2G37040 84.604 0.0 1248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181447g00003 K10775 - gmx:100811101 1295.8