Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181446g00016 ATGGACGCTCTTGACGACGACGATTCCTCTTTGCACCCCCTCCACCATTCACAAAAGGATCATAATGCGGATTCCAACTCCCCTCCTCACCTCCAACAGGATCACGACGACGCCACCTTCGATCACCAAAGTGATGACAACACCAATGCCAATTCTGCTCTTGTTCCTGAGGCCAAGACCAATAGCACCAATACGCGCCACGACAATCGCCTTCAAGATCCTAAACTCCATTCGCACCATGAACTTCTCACTCCCAAGCCTAAAGAGAGGAATGTTAGGGAAATGAAGAACGTTCTCAATGATTCCGAGATGACTGATTATGACGACTCCGGTACGTGCTCCGAGCGAGAAGCATTCATGAGAGAGCTGGAAAGTTTCTACAGAGAGAGGTCGTTGGAGTTCAAGCCTCCTAAGTTTTATGGAGAGCCACTCAATTGCCTCAAGTTATGGAGAGCTGTCATCAAACTTGGTGGCTATGATGTGGTAACTGGGAATAAGTTGTGGCGGCAAGTCGGAGAGTCTTTCCACCCACCCAAGACCTGCACTACAGTCTCATGGACGTTTAGAATCTTTTATGAGAAGGCACTTTTAGAGTATGAAAAATATAAGAGAGAAATTGGGGAGCTGCAGCTCCCTGTTGGATCATTTCATCAATCTTCAAGTGTGGAAAAAGAGACTTCTGTTTACCATGCTTCGGGCTCTGGCTCTGGTAGGGCACGAAGGGATGCGGCAGCACGTGCAATGCAAGGTTGGCATGCTCAGCGCCTTCTTGGATATGGTGAGGTTGCTGAGCCAGTTATTAAGGATAAGAACTCCAGTTCTACTCCAAAACGTGAAAAGAACCTCAAAAGTATTGGTATGCTTAATAAACACAGGACGCCATCTGTTCTTGAGCATGCTGAGAAAGCTGCAAATATGGATGGAGATAGACAATTGGTCACAGCAGTTGTGGATGTTGGACCCCCAGCAGACTGGGTGAAGGTCAATGTGCGAGAAACTAAGGATTGTTTTGAGGTTTATGCACTTGTTCCTGGACTCCTTCGCGAGGAGGTGCGGGTCCAATCAGATCCAGTTGGCCGTCTTGTTATAACTGGTCTCCCCGAACATGTTGACAATCCATGGGGAATTACCCCTTTCAAAAAGGTTGTGAACTTACCTGCAAGAATTGATCCGCTTCAGACATCTGCTGTGGTTAGTTTGCATGGCCGACTGTATGTACGTGTTCCCTTTGAGCAAGGAGCTGTGTAA 1248 0.4744 MDALDDDDSSLHPLHHSQKDHNADSNSPPHLQQDHDDATFDHQSDDNTNANSALVPEAKTNSTNTRHDNRLQDPKLHSHHELLTPKPKERNVREMKNVLNDSEMTDYDDSGTCSEREAFMRELESFYRERSLEFKPPKFYGEPLNCLKLWRAVIKLGGYDVVTGNKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKYKREIGELQLPVGSFHQSSSVEKETSVYHASGSGSGRARRDAAARAMQGWHAQRLLGYGEVAEPVIKDKNSSSTPKREKNLKSIGMLNKHRTPSVLEHAEKAANMDGDRQLVTAVVDVGPPADWVKVNVRETKDCFEVYALVPGLLREEVRVQSDPVGRLVITGLPEHVDNPWGITPFKKVVNLPARIDPLQTSAVVSLHGRLYVRVPFEQGAV 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181446g00016 415 MobiDBLite consensus disorder prediction 44 62 - -
Stsc181446g00016 415 Pfam ARID/BRIGHT DNA binding domain 115 200 IPR001606 GO:0003677
Stsc181446g00016 415 Pfam Hsp20/alpha crystallin family 330 411 IPR002068 -
Stsc181446g00016 415 SMART ARID_2 110 200 - -
Stsc181446g00016 415 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 31 412 IPR045147 GO:0006357
Stsc181446g00016 415 FunFam AT-rich interactive domain-containing protein 3 306 414 - -
Stsc181446g00016 415 Gene3D - 113 211 IPR036431 GO:0003677
Stsc181446g00016 415 MobiDBLite consensus disorder prediction 63 87 - -
Stsc181446g00016 415 SUPERFAMILY HSP20-like chaperones 323 410 IPR008978 -
Stsc181446g00016 415 ProSiteProfiles ARID domain profile. 113 204 IPR001606 GO:0003677
Stsc181446g00016 415 CDD ARID 115 200 - -
Stsc181446g00016 415 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 314 415 IPR002068 -
Stsc181446g00016 415 SUPERFAMILY ARID-like 109 211 IPR036431 GO:0003677
Stsc181446g00016 415 CDD ACD_sHsps_p23-like 330 409 - -
Stsc181446g00016 415 SMART bright_3 114 205 IPR001606 GO:0003677
Stsc181446g00016 415 MobiDBLite consensus disorder prediction 1 23 - -
Stsc181446g00016 415 MobiDBLite consensus disorder prediction 1 87 - -
Stsc181446g00016 415 FunFam AT-rich interactive domain-containing protein 3 113 212 - -
Stsc181446g00016 415 Gene3D - 313 414 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181446g00016 Stsc-Chr181446 68267 72686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181446g00016 84 412 ARID Transcription Factor Family AT1G76510 66.970 4.59e-153 438
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Stsc181446g00016 ARID 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181446g00016 - - adu:107461292 733.791