Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181446g00013 ATGGCTTACCAAGCAATTCAGGGCCCAAGCTCGGGATCGAGTTCAAGTTCGGGGTTTCAATTACTGAACTCTCCCTTCGGTGACACCACATACACCAAGGTTTTCGTGGGAGGGCTGGCATGGGAGACTCAGAGCGAAACCATGCGCCGCTACTTCGAGCAGTTCGGGGACATTCTGGAGGCCGTAGTCATCACTGACAAGAACACGGGGAGATCCAAAGGCTATGGTTTTGTGACTTTCCGGGATCCTGAGGCTGCCAGGAGAGCATGTGCTGATCCAACTCCGATCATTGATGGTAGAAGGGCTAATTGTAACTTGGCTTCACTTGGTCGACCACGCCCTCCTCTGCCTTATGGACGGATAAGACCAGCCTCCCCATATGTTGGAGGTTTGCAACCAGCGAGAGGAGCCTTTGTGGGAGGTTTTGGCTACCAGCAACCAGTTTCATATGGCTATCAACAGGGGTTGGTTTATCCACCATATGGGTATACGACATATGGACCTGAATACGTCTACCCACAGAGTATGTACAATCCATATATGGGTCAACAGTACCTTCAGATATATGGAGTGCCGGGTGCAGTAAACACAGCCATTTATCCTTATGGACAACTGGGTCAGGCTATACCTAGTGGACATGGGTATACAGCAATGCAAGGCTACACAGTACCAGGCCATCAGATTGTGCCCTATGGTGGATCTAATGTTAATGCCATAACAACTTCACCTATGCCTGCCATTCAAACACCATACCCTAGTGTTCCAGGCCAACCACAATTTATTGTTCCTGCTCCTTCTCCGCAGTTTATGCAAGGCAGTGGTCCAGACCAAACAGCTGGGTGA 843 0.4994 MAYQAIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRYFEQFGDILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGGLQPARGAFVGGFGYQQPVSYGYQQGLVYPPYGYTTYGPEYVYPQSMYNPYMGQQYLQIYGVPGAVNTAIYPYGQLGQAIPSGHGYTAMQGYTVPGHQIVPYGGSNVNAITTSPMPAIQTPYPSVPGQPQFIVPAPSPQFMQGSGPDQTAG 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181446g00013 280 PANTHER BOULE-RELATED 10 251 - -
Stsc181446g00013 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Stsc181446g00013 280 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 26 113 - -
Stsc181446g00013 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Stsc181446g00013 280 SUPERFAMILY RNA-binding domain, RBD 31 144 IPR035979 GO:0003676
Stsc181446g00013 280 CDD RRM_RBM24_RBM38_like 32 107 - -
Stsc181446g00013 280 Gene3D - 4 116 IPR012677 -
Stsc181446g00013 280 SMART rrm1_1 33 105 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181446g00013 Stsc-Chr181446 54554 57253 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181446g00013 21 214 C2H2 Transcription Factor Family AT2G19380 30.244 9.70e-17 78.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181446g00013 - - gmx:100779244 513.457