Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181446g00010 ATGTCGGGATCGGAGATGGCAAGCAGAGAAAGCTTCACCGTTGGTCTTCACAACCATAACAACATGCGTTTGGATTTTGATGGCACTGCTCTCTTCACCACCGCCAACAACAACAACAACCCTCTCGCGCCGCCTTCTGCTTCTCCAACTTACCACCCTTCCACCGCAGTCACTGCCGCTCCTATCAACATCAATGGCGGCGCTGTTGGCGCCGTCGAATCGTCGGCGTTGATACCACTTGGTGGCCACGTCGGGAGCAGCTCTGAGCCGAAGAAGAAGAGGGGGAGGCCAAGGAAATACGTACCTGATGGCGGCGCTGTAGGGTTAGGGCTGAAGCCTGATTCTTCTCCTCCCGGTGTTCCCGTTAACCATAGCCAGAACCAGAATCCGAACCTGAACTCTCAGTCCGGTGGAGGAGCTTTATCGCCAGGAATTGCCTCCGCCATGGCTAATTCAAATTCCGGGAAGAAAAGAGGCAGGCCTCGTGGCTCTCGCAACAAGCATCGTCACTTAAAGGGTGTTGGATTGGCAAAACTTTCTTTCACACCACATGTTCTTACTGTGAAAGCTGGAGAGGATCTCGGAGTAAAGGTTACATCAATCTCCATGGATGGTCCAAGAAATATTTGTATCTTAACAGCAAATGGAACCATATCTAATGTAACACTCAGCCAACCTTCGATACCTGGAGGAACTGTCACTTATGAGGGACGATTTGAAATCCTGGCACTCTGTGGTTCTTTTCTTCTTTCTGAAAATGGTCAGTTCCAAAGAACTGGTTCTTTAAGTCTGACCTTGTCTGGGCCCGATGGCCGCGTTATGGGTGGTGCAATCGCAGGTGTTTGTGTAGCTGCTTCCCCAATTCAGATAGTTTTCGCAAGCTTCCTTGTAGATGGTTACAAGAAAATGAAGTCCACGAACCAGATGGGGGCCTTTTCTGCCCCGCCTAACGTTCTGACAGCAGGTCAAAGCAGCTCCCCATCGCATGGTACTCTTAGTGAATCTTCTGGTGGAGCTGGGAGCCCAATTAACCTGAGCACAGAGGTTTGCAATAACAATAACACCGCACAAGGACTTTCTGGAATGCCATGGAAATGA 1098 0.5018 MSGSEMASRESFTVGLHNHNNMRLDFDGTALFTTANNNNNPLAPPSASPTYHPSTAVTAAPININGGAVGAVESSALIPLGGHVGSSSEPKKKRGRPRKYVPDGGAVGLGLKPDSSPPGVPVNHSQNQNPNLNSQSGGGALSPGIASAMANSNSGKKRGRPRGSRNKHRHLKGVGLAKLSFTPHVLTVKAGEDLGVKVTSISMDGPRNICILTANGTISNVTLSQPSIPGGTVTYEGRFEILALCGSFLLSENGQFQRTGSLSLTLSGPDGRVMGGAIAGVCVAASPIQIVFASFLVDGYKKMKSTNQMGAFSAPPNVLTAGQSSSPSHGTLSESSGGAGSPINLSTEVCNNNNTAQGLSGMPWK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181446g00010 365 CDD DUF296 182 295 IPR005175 -
Stsc181446g00010 365 SMART AT_hook_2 155 167 IPR017956 GO:0003677
Stsc181446g00010 365 SMART AT_hook_2 91 103 IPR017956 GO:0003677
Stsc181446g00010 365 MobiDBLite consensus disorder prediction 317 347 - -
Stsc181446g00010 365 MobiDBLite consensus disorder prediction 82 170 - -
Stsc181446g00010 365 Gene3D - 183 311 - -
Stsc181446g00010 365 ProSiteProfiles PPC domain profile profile. 177 317 IPR005175 -
Stsc181446g00010 365 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 48 344 IPR039605 GO:0003680
Stsc181446g00010 365 MobiDBLite consensus disorder prediction 119 154 - -
Stsc181446g00010 365 SUPERFAMILY AF0104/ALDC/Ptd012-like 180 300 - -
Stsc181446g00010 365 Pfam Plants and Prokaryotes Conserved (PCC) domain 183 295 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181446g00010 Stsc-Chr181446 44080 47119 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181446g00010 1 365 AT-hook Motif Nuclear Localized (AHL) Family AT2G33620 44.862 1.07e-74 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181446g00010 - - ahf:112705741 595.119