Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181446g00008 ATGGAAGAAATAGTGTGTGAGATGAGTGATCATGAAAAGAGAAACGGTGAAGGAGGTCTGCCACCGGGTTTCAGGTTCCACCCAACTGACCAAGAACTCATTACCTTCTATTTGGCTTCAAAGGTCTTCAATACTTCTTCTACTCATCTCAACTTTGTCGAGGTTGATCTCAATCGATGTGAGCCATGGGAGCTTCCAGAAGTGGCAAAGATGGGTGAGAGAGAGTGGTATCTGTACAGCGTGAGAGACAGGAAGTACCCAACAGGGCTCAGAACAAACAGAGCAACTGCTGCTGGCTACTGGAAGGCCACCGGCAAGGACAAGCAAGTCTACGGCGGTGGCTGTGGTGGTGGTGGGGTTGTTGGGATGAAGAAGACACTTGTGTTCTACAAAGGGAGGGCCCCACGTGGTCAGAAGACGAAATGGGTAATGCATGAGTTCCGGTTGGACCCTCACACCTCTCCTTCTTCTCTCTCAAAGGATGAGTGGGTAATATGCAGAATATTTCATAAAACTGGAGAAAAGAGAACAACACATCAGCTTCAGCAACAGCATCATCCCTTGCTATTCCAATCCCCATCATCACTTGTTAATCTCCACAACACCCACCACATCTCACCATTACTTCATCCAGTTTTCCCACCAACCCCTGCAGCAGAACCCACCAACAAAAACAGATCATCATCATCATCAATAATAATGAACAACCATAATAATAACTATCCTCCACCACCACTACCTTCCTCTCAAAACTTGCTCAAGCTCAACAAGTCTATTAATAAATTAACAAAAACACAGCCTCCTTCAACATCATCACTCTTCCAATACCAACATCAGCAGCTTCCAGATGATCCCAACTTGTTATTGCATTGGATGGACACGAGTAATAATAATAACAACTGCAACCAGATAATAATGGATGCTGCTGCTAGCTTGATAGGTTTCTCATCAGGTGGAGGAGGAGGACCTTCACCTACTACTGCTGCTAATGCTGAAATAATAAGGGACATAATCATGTCTTCTTCTCCGGCTTCCATGCTGGACCATGATGGGGTACAATCTTGGCCTCATCACCATCTGTAA 1083 0.4524 MEEIVCEMSDHEKRNGEGGLPPGFRFHPTDQELITFYLASKVFNTSSTHLNFVEVDLNRCEPWELPEVAKMGEREWYLYSVRDRKYPTGLRTNRATAAGYWKATGKDKQVYGGGCGGGGVVGMKKTLVFYKGRAPRGQKTKWVMHEFRLDPHTSPSSLSKDEWVICRIFHKTGEKRTTHQLQQQHHPLLFQSPSSLVNLHNTHHISPLLHPVFPPTPAAEPTNKNRSSSSSIIMNNHNNNYPPPPLPSSQNLLKLNKSINKLTKTQPPSTSSLFQYQHQQLPDDPNLLLHWMDTSNNNNNCNQIIMDAAASLIGFSSGGGGGPSPTTAANAEIIRDIIMSSSPASMLDHDGVQSWPHHHL 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181446g00008 360 SUPERFAMILY NAC domain 17 171 IPR036093 GO:0003677|GO:0006355
Stsc181446g00008 360 ProSiteProfiles NAC domain profile. 20 171 IPR003441 GO:0003677|GO:0006355
Stsc181446g00008 360 FunFam NAC domain-containing protein 100-like 29 175 - -
Stsc181446g00008 360 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 18 256 - -
Stsc181446g00008 360 MobiDBLite consensus disorder prediction 220 239 - -
Stsc181446g00008 360 Gene3D NAC domain 29 175 IPR036093 GO:0003677|GO:0006355
Stsc181446g00008 360 MobiDBLite consensus disorder prediction 213 251 - -
Stsc181446g00008 360 Pfam No apical meristem (NAM) protein 21 149 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181446g00008 Stsc-Chr181446 36749 38290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181446g00008 1 241 NAC Transcription Factor Family AT1G76420 55.602 1.00e-88 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181446g00008 NAM 8.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181446g00008 - - aip:107607453 400.208