Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181446g00005 ATGAAGGGAAAAAGAAAAGGAATAGTGGGAGTGGGAGCAGTGGTTGTTACTTATAGTGCTGCTCCAACTCAAACCCAAACACATTCACTCACACAAACAAACCACTCTCTCTCTCTCTCTAATTCTTTCTTTCTCTCTCTTTCTGTTGAGACAAGAAACGAACGCACCAATCACATGACTCGTCCCTTGAGAATTTTAGGCGAGAGCAACTCGTCAACCACCGACAACGCTCCCTCCGTCGTCGACTCCGATTTCGTCGTCATCCTCGCCGCTCTCATCTGTGCTCTCATCTGCGTGCTCGGCCTCGTTGCTGTAGCTCGCTGCGCTTGTCTCCGCCGCCTCCGCCTCTCATCCTCTTCCGCCGCCGCTACTCCCTCGCCTCCCGCAGCTGCTAACAAAGGTGTCAAGAAGAAGGTACTCAGCTCTCTTCCCAAGGTCACCGCCACAGTCGAATCCGCCGGAAAATTCTCCGACTGCGCCATCTGCCTCGCGGAGTTCGCCGCCGGAGACGAGATCCGAGTGCTGCCTCAGTGCGGCCACGGCTTCCACGTGTCGTGTATCGACGAGTGGCTGAGGTCTCATTCGTCGTGTCCGTCGTGCCGTCAGATTCTGGTGGTTCCGAGATGCAACAAGTGCGGTGGTTTTCCAGCACCTGCTAGCTCGAGCACCGCCGCCACCGTCACCGCCTCTCAGCCACCGGAATCTGAATCCACAATCAAAATAAGCAGCGATCATGGCAATAGGTTCTTACCTTAA 756 0.5503 MKGKRKGIVGVGAVVVTYSAAPTQTQTHSLTQTNHSLSLSNSFFLSLSVETRNERTNHMTRPLRILGESNSSTTDNAPSVVDSDFVVILAALICALICVLGLVAVARCACLRRLRLSSSSAAATPSPPAAANKGVKKKVLSSLPKVTATVESAGKFSDCAICLAEFAAGDEIRVLPQCGHGFHVSCIDEWLRSHSSCPSCRQILVVPRCNKCGGFPAPASSSTAATVTASQPPESESTIKISSDHGNRFLP 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181446g00005 251 MobiDBLite consensus disorder prediction 217 251 - -
Stsc181446g00005 251 Pfam Ring finger domain 158 201 IPR001841 -
Stsc181446g00005 251 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 75 213 - -
Stsc181446g00005 251 MobiDBLite consensus disorder prediction 217 244 - -
Stsc181446g00005 251 SMART ring_2 159 200 IPR001841 -
Stsc181446g00005 251 ProSiteProfiles Zinc finger RING-type profile. 159 201 IPR001841 -
Stsc181446g00005 251 SUPERFAMILY RING/U-box 152 207 - -
Stsc181446g00005 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 205 IPR013083 -
Stsc181446g00005 251 CDD RING-H2_EL5-like 158 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181446g00005 Stsc-Chr181446 21419 22520 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181446g00005 59 251 C3H Transcription Factor Family AT1G20823 59.113 9.86e-68 206
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181446g00005 - - pvu:PHAVU_009G007400g 219.55