Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181445g00013 ATGAGTTTTCAAGATATACAAGCTGGCCCTAACGCAACCCTGCGTCGAACCCAGACTCCGTCGCAGGCCATCGCCGCCGGAATCTTCCAGATCAACACTTCCGTCTCCACTTTCCGCCGCCTCGTTGATGCCCTTGGAACAGTTAAAGACACTCCCGACCACCGTCACAAGCTGCATAACACGAGACAGAGGATATTGCAGCTGGTGAAGGATACTTCTGCTAAGCTCAAGTCTTTGAGTGAATCTGATCGCGATGCTGCTGCTTCTAATGCTAATAAGAAAATCGAAGATGCTAAGCTAGTGAGAGATTTCCAAACCACATTGCAGGAATTCCAGAAAGTGCAGCAGCTTGCATCCGAGCGCGAATCGACTTACACCCCTACTGCCGCACCTTCTTTCCCGATAAGCTCTGGCTCTGGTGAAGAATCGGTTGAGAGAGACCAGGACAGCCAACCTTTTATCAGAGAGCAAAGAAGGCAAGAGGTACTTCTCTTGGATAATGAAATCTCCTTCAATGAGGCCATGATTGATGAAAGAGAACAGGGTATTAGAGAGGTACAAGAACAAATCGGACAAGCTAATGACATATTCAAGGACCTGGCTGTTCTTGTTCATGACCAAGGGGTTGTTATTGATGACATTCAATCGAACATCGACACTTCCGCTGGTGCAACAACCCAAGCTAGAGTTCAGCTAGCTAAAGCTTCCAAAAATGTGAAATCTAGAATCTCATGGTGTTGGTGGGTGCTTGTAATTTTTGTGGTGGTTCTGGTGATCTTACTTCTTGTACTGATTATTTAG 801 0.4644 MSFQDIQAGPNATLRRTQTPSQAIAAGIFQINTSVSTFRRLVDALGTVKDTPDHRHKLHNTRQRILQLVKDTSAKLKSLSESDRDAAASNANKKIEDAKLVRDFQTTLQEFQKVQQLASERESTYTPTAAPSFPISSGSGEESVERDQDSQPFIREQRRQEVLLLDNEISFNEAMIDEREQGIREVQEQIGQANDIFKDLAVLVHDQGVVIDDIQSNIDTSAGATTQARVQLAKASKNVKSRISWCWWVLVIFVVVLVILLLVLII 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181445g00013 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Stsc181445g00013 266 SMART SynN_4 9 123 IPR006011 GO:0016020
Stsc181445g00013 266 Pfam Syntaxin-like protein 24 125 IPR006011 GO:0016020
Stsc181445g00013 266 FunFam Syntaxin-22 like 166 266 - -
Stsc181445g00013 266 CDD SNARE_Qa 176 234 - -
Stsc181445g00013 266 FunFam Syntaxin-22 like 15 129 - -
Stsc181445g00013 266 Gene3D - 9 130 - -
Stsc181445g00013 266 PANTHER SYNTAXIN 22 254 IPR045242 -
Stsc181445g00013 266 SMART tSNARE_6 168 235 IPR000727 -
Stsc181445g00013 266 Pfam SNARE domain 210 261 IPR000727 -
Stsc181445g00013 266 Gene3D - 167 266 - -
Stsc181445g00013 266 MobiDBLite consensus disorder prediction 118 151 - -
Stsc181445g00013 266 SUPERFAMILY t-snare proteins 18 228 IPR010989 GO:0016020|GO:0016192
Stsc181445g00013 266 MobiDBLite consensus disorder prediction 118 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181445g00013 Stsc-Chr181445 61618 65221 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181445g00013 1 253 SNARE and Associated Proteins AT5G46860 56.589 3.73e-93 274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181445g00013 - - aip:107604899 434.106