Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181444g00013 ATGCCTGCGCCTCCTCCTAACTACACCCACCGCACCAAACACACACACCCCAGGCTCGTCAGGATAACAGTCACTGACGCTGATGCCACCGACTCCTCCAGCGACGAAGCAGAATCCTCCACGCCCCACCGCCGACCGAGAAAGCTCGTCAACGAGATTCTTATCGAGCCCTGCGCAGTTCTTCCTCGGAAGAGAACCAAGAAGTCAAGCACCCCCTCAGGCAAGCCCAAAGCTCCAGCAATTCGCCGGCAACACTCCGGCCGGAAGTTCCGGGGAGTAAGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATAAGAGACCCCTCACGGCGCGTGAGGCTATGGTTGGGTACTTATGACACCGCGGAGGAAGCTGCCATGGTGTACGACAACGCTGCCATTAAACTCCGTGGACCAGACGCGCTCACCAATTTCATAACGCCGCCACCAACCACAACGCCAGAAAATAATAATAATAATATTAATATTAATAATAAAAATAAAACAGAAGCACCGACTGTTGTGGTAAACGGTTACAGTTCCGGTGAGGAGTCTCAAAGCGCCAACATCAATCACAGTCACAGTCACAGTCACAGTAACAGTAACAGTCAAAATCTGTTCTCTCCAACTTCAGTGCTTCATCATCATCATAATCAGTGCTGTTATTCCTTATCAGAGGAAGGTACTGAATCCGTAACGGGCAAAGAGGATGAATATTCGAGCGTGTCGGAGAATATTAAGGTCAAATCTGAGGAAGATGATTCGTCATTCCTTCATATTCCGAGTGATGTGCTGTTTGATTTTGAAGGTTGCTCTTCGTCGTTGGTGGTGCCGGATGTTTTTGACGAAAACAATCTCTTCGCCGACGATTTCTCCCTCCTCACTTCTTGTGAGGACTTTGATTTCGGCTTCAAAAGCTGGCACAGAGAGGATGACTTCTTCCAAGATATAACTGATTTATTCCCTTCAGATCCGCTTCTTGCTCTTTGA 990 0.4939 MPAPPPNYTHRTKHTHPRLVRITVTDADATDSSSDEAESSTPHRRPRKLVNEILIEPCAVLPRKRTKKSSTPSGKPKAPAIRRQHSGRKFRGVRQRPWGKWAAEIRDPSRRVRLWLGTYDTAEEAAMVYDNAAIKLRGPDALTNFITPPPTTTPENNNNNININNKNKTEAPTVVVNGYSSGEESQSANINHSHSHSHSNSNSQNLFSPTSVLHHHHNQCCYSLSEEGTESVTGKEDEYSSVSENIKVKSEEDDSSFLHIPSDVLFDFEGCSSSLVVPDVFDENNLFADDFSLLTSCEDFDFGFKSWHREDDFFQDITDLFPSDPLLAL 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181444g00013 329 MobiDBLite consensus disorder prediction 1 47 - -
Stsc181444g00013 329 FunFam Ethylene-responsive transcription factor 2 88 147 - -
Stsc181444g00013 329 MobiDBLite consensus disorder prediction 81 95 - -
Stsc181444g00013 329 Pfam AP2 domain 89 138 IPR001471 GO:0003700|GO:0006355
Stsc181444g00013 329 SUPERFAMILY DNA-binding domain 89 145 IPR016177 GO:0003677
Stsc181444g00013 329 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 16 237 - -
Stsc181444g00013 329 Gene3D AP2/ERF domain 88 147 IPR036955 GO:0003700|GO:0006355
Stsc181444g00013 329 SMART rav1_2 89 152 IPR001471 GO:0003700|GO:0006355
Stsc181444g00013 329 PRINTS Ethylene responsive element binding protein signature 90 101 IPR001471 GO:0003700|GO:0006355
Stsc181444g00013 329 PRINTS Ethylene responsive element binding protein signature 112 128 IPR001471 GO:0003700|GO:0006355
Stsc181444g00013 329 MobiDBLite consensus disorder prediction 62 95 - -
Stsc181444g00013 329 MobiDBLite consensus disorder prediction 180 209 - -
Stsc181444g00013 329 CDD AP2 89 141 IPR001471 GO:0003700|GO:0006355
Stsc181444g00013 329 ProSiteProfiles AP2/ERF domain profile. 89 146 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181444g00013 Stsc-Chr181444 59809 60798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181444g00013 9 329 AP2-EREBP Transcription Factor Family AT4G23750 41.860 7.36e-55 181
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Stsc181444g00013 AP2 2.4e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181444g00013 - - ahf:112801434 454.521