Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181441g00007 ATGAAAGCTGAGCTGAAAGGAGCATCCTCCATCTCCTTCCAAAACCACACCCTCTTCAACACGGCGCCACACAGCACCACTTCATCATCACTCAACGGAGCACTCAAAGGATGTCTCGGAAGCCTCGACGGCGCCTGCATCGAGAAGCTTCTCCTCCACTGCGCAAGCGCCTTGGAGAGCAACGATGTAACCTTAGCACAGCAAGTCATGTGGGTTCTCAACAACGTTGCTTCACCAACCGGCGACACAAACCAAAGGCTCACATCATGGTTCCTCAGGGCACTCATCTCTAGGGCTTCAAGGATTTGCCCTACAGCCTTGAGCTTCAAGGGAAGCAGCAACGCCATTCACAGGAGGTTGATGACGATTACAGAGCTTGCAGGGTACGTGGATCTCATTCCATGGCATAGGTTTGGGTTCTGTGCTTCAAATAATGAGATTTTCAAGGCAATTTTAGGGTTCCAAAGGGTACATATCTTAGACTTTAGCATCACTCATTGTATGCAATGGCCTACTTTCATTGATGCATTGGCCAAAAGCCCTGAAGGTACTCCTTCACTTAGAATCACTGTCCCATCTTTTAGGCCACCAGTGCCTCCATTGGTGAATGTCTCAACTCATGAGGTTGGTCTTCGGCTAGCGAATTTCGCAAAGTATAGGGATGTCCCTTTTGAATTCAATGTCATAGGGAATAATTTAGGTCCCTTATTGGCACCTAATAATTCTGAATTAAGCAATGAATCAACTAGTTTTCATTTTGAGTCATTGCTGAGTCTGTTGAGTCCTAGTGTCCTAAACCTTAGGGATGATGAGGCTTTGGTAATAAATTGTCAAAATTGGCTTCGTTATTTGTCTGATGACAGAAAGGGAAACCACAGAGGCCTTTCTCTCCGTGATGCTTTCTTGAATTTAGTTAAAGGTCTTAACCCTCAGATTGTGGTTGTGGTGGATGAGGATTGTGATCTTAGTTCACCAAGCCTGACATCAAGAATTGCAACATGTTTCAACCATCTGTGGATACCCTTTGATGCATTGGAGACTTTCCTGCCTAAGGACAGTTGCCAGAGGACAGAGGTCGAATCCGACATTGGGCAGAAGATTGAGAACATCATAGGATATGAAGGGCATCAGAGGATAGAGAGGTTGGAGTCAGGGATGCAGATGTGCCAGAGAATGAAGAATGCTGGTTACTTGAGCCTCCCATTCTGTGATGAAACGGTTATGGAAGTTAAGGGTTTGCTTGATGAGCATGCTAGTGGATGGGGGATGAAGAGGGAAGAAGGCATGTTGGTTCTCACATGGAAGGGGAACAGCTGTGTCTATGCCACCTCTTGGGTCCCCAGTGAAACCAGGGATCATCATATTGCCTTGGATGCAATTATCTCATAG 1389 0.4615 MKAELKGASSISFQNHTLFNTAPHSTTSSSLNGALKGCLGSLDGACIEKLLLHCASALESNDVTLAQQVMWVLNNVASPTGDTNQRLTSWFLRALISRASRICPTALSFKGSSNAIHRRLMTITELAGYVDLIPWHRFGFCASNNEIFKAILGFQRVHILDFSITHCMQWPTFIDALAKSPEGTPSLRITVPSFRPPVPPLVNVSTHEVGLRLANFAKYRDVPFEFNVIGNNLGPLLAPNNSELSNESTSFHFESLLSLLSPSVLNLRDDEALVINCQNWLRYLSDDRKGNHRGLSLRDAFLNLVKGLNPQIVVVVDEDCDLSSPSLTSRIATCFNHLWIPFDALETFLPKDSCQRTEVESDIGQKIENIIGYEGHQRIERLESGMQMCQRMKNAGYLSLPFCDETVMEVKGLLDEHASGWGMKREEGMLVLTWKGNSCVYATSWVPSETRDHHIALDAIIS 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181441g00007 462 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 47 440 IPR005202 -
Stsc181441g00007 462 Pfam GRAS domain family 48 445 IPR005202 -
Stsc181441g00007 462 ProSiteProfiles GRAS family profile. 38 446 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181441g00007 Stsc-Chr181441 38671 40059 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181441g00007 35 447 GRAS Transcription Factor Family AT3G49950 44.181 5.32e-116 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Stsc181441g00007 GRAS 2.6e-83 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181441g00007 - - gmx:100802093 746.888