Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181441g00005 ATGGAGCCTTACAGTATAGACCCAATGTTCTCAGGGATGAGCCTGCAATCACTCCTAAACCTAAACCCCTCACTCCTCTCCTTACTCACCGACCACCCTCCACAACCACCACAACTACCAAACTATCAACCCTTCAACTTCATCCCCAAACGCCCCCGCCTCCATTACTCCTCCTGTTGTTCGTCATCGTCATCATCATCCACGCCGTCTTCACACCGCGCAAAGCCCCTTCCTCCGAAGAGCAACTTCGCTCGCCAGAGGAGGCAGAAGCTCAGCGAGAAGACTCGCTGCCTCCAGAAGTTGATGCCATGGGACAAGAAGATGGATCAGGCCACACTCTTCGAACAAGCCTACACCTACGTTAAGTTCTTGCAGGCTCAGGTCTGCGTTCTTCAATCCATGCCCTACCACACACCACCACCACCACCACCACCGTCCTTCAACAATGGCGGCCGCGGTTGTGTGTTCGGTTTCGGCGACCTAGAGAGGCTGAGCAGGAACCAGTTGCTGCAGGTACTGGTGAACTCTCCGGTGGCGCAGACGGTGATGTCGTCGCAGGGCCTGTGCGTGTTCTCGATGGAGCAGTTAGATTTGCTGACGAAACTGTCGTCGGAGCGGAGGCTTCTCCTTGAGAGCATGAACGCCAATAACAACAAGATGAACATGGTGTCTGATTCCAAACCATTCTTCAACTAA 696 0.5388 MEPYSIDPMFSGMSLQSLLNLNPSLLSLLTDHPPQPPQLPNYQPFNFIPKRPRLHYSSCCSSSSSSSTPSSHRAKPLPPKSNFARQRRQKLSEKTRCLQKLMPWDKKMDQATLFEQAYTYVKFLQAQVCVLQSMPYHTPPPPPPPSFNNGGRGCVFGFGDLERLSRNQLLQVLVNSPVAQTVMSSQGLCVFSMEQLDLLTKLSSERRLLLESMNANNNKMNMVSDSKPFFN 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181441g00005 231 Gene3D - 79 136 IPR036638 GO:0046983
Stsc181441g00005 231 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 140 IPR036638 GO:0046983
Stsc181441g00005 231 SMART finulus 81 130 IPR011598 GO:0046983
Stsc181441g00005 231 MobiDBLite consensus disorder prediction 58 75 - -
Stsc181441g00005 231 MobiDBLite consensus disorder prediction 58 89 - -
Stsc181441g00005 231 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 78 201 IPR045843 GO:0003700|GO:0006355
Stsc181441g00005 231 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 75 124 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181441g00005 Stsc-Chr181441 15598 16293 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181441g00005 87 196 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G22100 45.045 6.39e-26 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181441g00005 - - aprc:113855910 190.274