Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181439g00010 ATGGCAACTCAAGGTCAAGTCATTACTTGCAAAGCTGCGGTGGCCTGGGAACCCAACAAGCCTTTGTCCATCGAAGACGTTCAGGTGGCTCCACCGCAAGCCGGTGAGGTTCGCGTTAAGATCCTCTACACCGCTCTCTGTCACACCGATGCTTACACCTGGAGTGGCAAGGATCCTGAAGGTCTCTTCCCTTGTATCCTTGGACATGAAGCTGCTGGAATTGTGGAGAGTGTTGGAGAAGGTGTTACTAATGTGCAGCCTGGAGATCATGTTATTCCATGTTACCAGGCTGAATGTGGTGAGTGCAAGTTCTGCAAATCTGGAAAAACAAACCTCTGTGGGAAGGTTCGGTCTGCCACTGGAGTTGGGGTGATGCTTAGTGACCGCAAGAGCCGTTTCTCTGTCAATGGGAAGGCCATTTATCATTTCATGGGAACATCCACCTTCAGCCAGTACACTGTTGTTCATGATGTGAGTGTGGCTAAGATTGATCCAGCTGCTCCTTTGGATAAAGTTTGTCTTCTTGGTTGTGGTGTTCCAACCGGGCTTGGAGCTGTCTGGAACACTGCAAAAGTTGAACCGGGGTCTATCGTTGCTGTTTTTGGTCTTGGAACTGTTGGTCTTGCTGTTGCAGAGGGTGCAAAAAGTGCTGGTGCATCTCGTATTATTGGCATTGATATCGATAGCAAGAAATTTGAAACAGCGAAGAACTTTGGAGTCACTGAGTTTATTAATCCTAAAGATCATGAGAAACCAATTCAACAAGTCATAGTTGATCTTACAGACGGCGGAGTTGATTATAGCTTTGAGTGCATTGGAAATGTATCTGTCATGAGATCTGCTTTGGAGTGCTGCCACAAGGGCTGGGGAACATCAGTTATCGTGGGTGTTGCTGCATCGGGCCAGGAAATATCAACTCGCCCTTTCCAATTGGTGACAGGGCGTGTTTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGCAGGTCACAAGTGCCTTGGCTTGTGGAGAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCACAATCTGACACTTAGCGAGATCAACAAGGCTTTCGATCTTATGCATGAAGGAGGATGTCTCCGATGTGTTCTTTCAACAGATGCATGA 1140 0.4711 MATQGQVITCKAAVAWEPNKPLSIEDVQVAPPQAGEVRVKILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVTNVQPGDHVIPCYQAECGECKFCKSGKTNLCGKVRSATGVGVMLSDRKSRFSVNGKAIYHFMGTSTFSQYTVVHDVSVAKIDPAAPLDKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKSAGASRIIGIDIDSKKFETAKNFGVTEFINPKDHEKPIQQVIVDLTDGGVDYSFECIGNVSVMRSALECCHKGWGTSVIVGVAASGQEISTRPFQLVTGRVWKGTAFGGFKSRSQVPWLVEKYLKKEIKVDEYITHNLTLSEINKAFDLMHEGGCLRCVLSTDA 379
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Stsc181439g00010 379 SUPERFAMILY GroES-like 3 198 IPR011032 -
Stsc181439g00010 379 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Stsc181439g00010 379 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Stsc181439g00010 379 Gene3D - 182 320 - -
Stsc181439g00010 379 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Stsc181439g00010 379 Pfam Zinc-binding dehydrogenase 206 328 IPR013149 -
Stsc181439g00010 379 SUPERFAMILY GroES-like 326 375 IPR011032 -
Stsc181439g00010 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
Stsc181439g00010 379 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Stsc181439g00010 379 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Stsc181439g00010 379 Gene3D - 13 372 - -
Stsc181439g00010 379 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Stsc181439g00010 379 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 201 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Stsc181439g00010 Stsc-Chr181439 69024 71971 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181439g00010 10 331 Monolignol Biosynthesis Gene Families AT1G72680 27.217 8.95e-16 75.9
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181439g00010 K00121 - cave:132165797 746.503