Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181439g00006 ATGCTATTCCTTCCGGCTCTGATTCCTGCCGCGGCGTCCACCATGATCGCCGCCGGCTCTCTCGCCGGAATTCTGCTGCTTTCTTCTCCTAGCGATGCTTCTCGCCGCTTTCGACTTCGCCGAGAGAGAATGCCGGCGTCAGTTTTCTTCCTCCTCGCTCTTCTCAACTTGCTACTATCCTGCTCAGTGAAGTCGGTTTCTGTGAGTGTTTCATTTGTCTCATCAGAACAAGCTAAAACTTGGTTAGTTAAACCTTCTTCTGGACCATCTGCTTCACCTGCACCTGCACCTGCACCATCTCCATCATATCAAGGTCCTATTGTTCATCCAAGTCCTAAACATCGCTATCATCATCACCACCATCATAGTGTAAGATCTTATCCAGCGGCTCCACCCCCTTCTAAAGACCAAGGTTGTGACCAAATTTGTACGGATCCTCTCACATCGACTCCTTTTGGGTCACCTTGTGGTTGTGTATTTCCCATGAAAGTCAAACTCACGCTGGGTGTAGCTCCTTATGCTGTTTTTCCGGTAATGAATGAATTAGAGATTGAAGTTGCGTTAGGCACATACTTAGAGCAGAGTCAGGTGAAGATAATGGGTGCTAGTGCTGATGGTCAGAATCAGGGAAGAACTGTAGTTGATATAAACTTGGTTCCATTGGGAGAGAAATTTGACAATACCACTGCAGCTCTGACATATGAGAGGTTTTGGCACAAGAAAGTCCCACTAAACAGAAGCCTTTTTGGTGATTATGATGTTTTGTATATTGCCTATCCAGGAATTTCATCATCGCCGCCAGTTCCATATGGAACCATAGCTGGGGATGCTCCTATGCAAAGTGTATCTGGTAGTCTACCAGTCTCTGCCAACTTTGTCAACAAGAATCAGAGAATGAATCTCAGAACCATAATCATCATCGCTTCATCTTCCTTTGTACTTTTGCTGGTTTTGGTTGGAGCAGTTTCTATCATTTTGAAATGTAAGAAGATTAGGAGGCCATCAAGTGCTGTTGGCCCTGCATTCACTTCATCTCTAAACAAGAGATCTGGTTTGGGTTCTATGTTGTCAAGCAGTATTACAAGCTCGACATCAGTGTCCCTTATGTCGACAATGGCTGCTTCCATTCTCTCTGTTAAAACATTTTCACTTTCTGAGCTTGAGAAAGCTACTGATAAGTTTAGTTCAAAGAGAGTACTAGGAGAAGGAGGATTTGGACGAGTTTACAGTGGGACATTGGAAGATGGGGCTGAAGTTGCAGTTAAGCTGCTGACTAGAGATCATCAGAATGGAGACCGCGAGTTTATTGCAGAAGTTGAAATGCTAAGCCGATTGCATCACCGGAATCTTGTGAAATTAATTGGCATATGTATTGAAGGGCGCCGACGATGCTTGGTGTATGAGCTTGTTCACAATGGCAGTGTTGAGTCCCATTTGCATGGTAACGTATAA 1452 0.4463 MLFLPALIPAAASTMIAAGSLAGILLLSSPSDASRRFRLRRERMPASVFFLLALLNLLLSCSVKSVSVSVSFVSSEQAKTWLVKPSSGPSASPAPAPAPSPSYQGPIVHPSPKHRYHHHHHHSVRSYPAAPPPSKDQGCDQICTDPLTSTPFGSPCGCVFPMKVKLTLGVAPYAVFPVMNELEIEVALGTYLEQSQVKIMGASADGQNQGRTVVDINLVPLGEKFDNTTAALTYERFWHKKVPLNRSLFGDYDVLYIAYPGISSSPPVPYGTIAGDAPMQSVSGSLPVSANFVNKNQRMNLRTIIIIASSSFVLLLVLVGAVSIILKCKKIRRPSSAVGPAFTSSLNKRSGLGSMLSSSITSSTSVSLMSTMAASILSVKTFSLSELEKATDKFSSKRVLGEGGFGRVYSGTLEDGAEVAVKLLTRDHQNGDREFIAEVEMLSRLHHRNLVKLIGICIEGRRRCLVYELVHNGSVESHLHGNV 483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181439g00006 483 ProSiteProfiles Protein kinase domain profile. 394 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181439g00006 483 MobiDBLite consensus disorder prediction 90 106 - -
Stsc181439g00006 483 ProSitePatterns Protein kinases ATP-binding region signature. 400 422 IPR017441 GO:0005524
Stsc181439g00006 483 SUPERFAMILY Protein kinase-like (PK-like) 358 482 IPR011009 -
Stsc181439g00006 483 Gene3D Phosphorylase Kinase; domain 1 365 469 - -
Stsc181439g00006 483 PANTHER OS01G0750732 PROTEIN 132 479 - -
Stsc181439g00006 483 FunFam receptor-like serine/threonine-protein kinase ALE2 367 469 - -
Stsc181439g00006 483 MobiDBLite consensus disorder prediction 83 135 - -
Stsc181439g00006 483 MobiDBLite consensus disorder prediction 111 125 - -
Stsc181439g00006 483 Pfam Protein tyrosine and serine/threonine kinase 396 481 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181439g00006 Stsc-Chr181439 36422 41017 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181439g00006 142 481 Receptor kinase-like Gene Family AT5G56890 48.034 1.45e-99 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Stsc181439g00006 PK_Tyr_Ser-Thr 1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181439g00006 - - gmx:100792309 649.818