Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181439g00001 ATGGCGGCTGTTGCTGCTGCCACTCCAATAGTTGGGTCCCATGTTTGGGTCGAGGATTCTGAAGTAGCATGGATAGATGGTGAAGTCTTGGAGGTTCATGGAGAAGAAGTTAAAGTCCTTTGCACTTCGGGGAAGACGGTTGTTGTTAAAGTTTCCTGTATTTATCATAAAGACACCGAAGTCCCGCCTAGTGGAGTAGATGATATGACAAAGCTTGCGTACCTGCACGAACCTGGTGTGCTAGAAAATCTGAGATCAAGATATGATATCAATGAAATTTATACATACACCGGAAATATATTGATTGCGGTGAACCCTTTTGTAAAGCTTCCTCATTTATACGATACTCATATGATGGCACAATATAAAGGAGCAGCATTTGGGGAGCTAAGTCCACATCCCTTTGCTGTTGCAGATGCTGCGTATAGGTTTATGATAAATGAGCGTATCAGCCAGTCAATATTAGTCAGTGGTGAAAGTGGAGCAGGTAAAACAGAAACTACTAAGTTACTTATGCGGTATCTTGCCTACATGGGAGGGAGAGCTGCTGCTGAAGGTAGAACTGTTGAGCAAAAAGTCTTGGAGTCCAATCCTGTTCTGGAAGCCTTTGGGAATGCAAAGACGGTTAGGAACAATAATTCAAGTCGTTTTGGTAAGTTTGTGGAGATTCAATTTGACCAAAGGGGAAGAATTTCAGGAGCTGCTATCAGAACATATCTGCTGGAAAGGTCACGCGTTTGTCAGCTGTCAGATCCAGAGAGGAATTATCACTGTTTCTACATGCTCTGCGCTGCACCACAGGAGGTTGTGGGATTCTTTTTCTTACGTTAA 831 0.432 MAAVAAATPIVGSHVWVEDSEVAWIDGEVLEVHGEEVKVLCTSGKTVVVKVSCIYHKDTEVPPSGVDDMTKLAYLHEPGVLENLRSRYDINEIYTYTGNILIAVNPFVKLPHLYDTHMMAQYKGAAFGELSPHPFAVADAAYRFMINERISQSILVSGESGAGKTETTKLLMRYLAYMGGRAAAEGRTVEQKVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDQRGRISGAAIRTYLLERSRVCQLSDPERNYHCFYMLCAAPQEVVGFFFLR 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181439g00001 276 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 265 IPR027417 -
Stsc181439g00001 276 Gene3D Kinesin motor domain 14 276 IPR036961 -
Stsc181439g00001 276 SMART MYSc_2a 58 276 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181439g00001 276 PANTHER MYOSIN 60 268 - -
Stsc181439g00001 276 Pfam Myosin N-terminal SH3-like domain 11 51 IPR004009 GO:0003774|GO:0005524|GO:0016459
Stsc181439g00001 276 Pfam Myosin head (motor domain) 66 266 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181439g00001 276 ProSiteProfiles Myosin motor domain profile. 64 276 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181439g00001 276 PRINTS Myosin heavy chain signature 198 225 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181439g00001 276 PRINTS Myosin heavy chain signature 151 176 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181439g00001 276 PRINTS Myosin heavy chain signature 94 113 IPR001609 GO:0003774|GO:0005524|GO:0016459
Stsc181439g00001 276 ProSiteProfiles Myosin N-terminal SH3-like domain profile. 10 59 IPR004009 GO:0003774|GO:0005524|GO:0016459
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181439g00001 Stsc-Chr181439 21670 23260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181439g00001 4 275 Myosins gene family AT5G43900 83.456 1.70e-160 483
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181439g00001 K10357 - gmx:100819463 496.893