Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181438g00007 ATGTCAGAGCTAGTAGCTCTGGTTGATGAGGTTGCTTCATTTGCTATGAATCCTGAAATTGAGATAGATGCTTTTACTGAGTTTGCCATGTTGGTTGAGAAATTGGCACCAATCTTCAGTGATTTGAGTAACAAAAGCACAGTCATAGAAAACAACCCATCCATCAGAAAATCTTTGGAATCTATCGAAACTTCGCTTAGCCGTGCTATAGCTTTGACAAAGAGTTCTAGCTTGAAAGACCCTATCAAATATATTGAGGACACAACACATGATATTGGTCGATCACTAGGCCTATTGCTCCTTGAATTGTCCACAGATTTTAGAGAAAAGATTGGTACATTGCAAAAACAGTTTATGAATGCAAGATTTGGTGGGAACATGAGCCTACCTTCAAGTCCAGTATCTTTAGAGTTTGCAAATGATGTGTCTGGTGGAGGGGAAATACAAGAGGAAACAGTTAATGTTACTATTGAAGATGTTGTGCTGCAACTTAAGAATGGCAATGATGAAGAATTTGCAGTTGCTCTTTGGAGACTGAAGGAGTTCATCAGGGATGAGAAGCTGGAAAGTTGTTTAATTAATGAGGAAGCTGTTGTTTCGGTTCTATTAAATAGACTGCGTTCGGGTAAGGCAGACAATAGACTTAACATCATTCAATTGTTAAGAAACATGGCTTTGGGAAACGATGAGACAAAGGAGAAGATGGCAGATACTGAGTTTTTATCAGCAGTGGTGAAGTCTCTAACAAGAGATGCAGAAGAGAGGAGGGAAGCAGTGGGACTGCTTCTAGAACTCTCTGATCTTCCTGCAGTTCGACGGCAAATCGGAAGAATTCAAGGGTGCATTGTAATGTTAGTCTCTATCCTTAATGGAAGCGACCCCATCGCTTCGCAAGGTGCAGCAAAGTTGTTGGATATATTGTCCAGTAATACTCAAAATGCACTTCACATGGCAGAGGCTGGTTACTTTAAGCCTCTAGTGCAGTATTTGAAGAAAGGCTCTGACATGAACAAGATCCTTATGGCAACAGCACTTTCTAGGTTGGTGCTAACTGACCAGAGCAAACTTTCCCTCGGCAAAGATGGGGCGGTCGAGCCCCTAGTCAACATGTTTCACACTGGCAAACTTGAGTCCAAGTTATCTGCTCTAAATGCCCTGCAAAATCTTTCCAGTGTGACAGAAAATGTGCAACTTCTAATCAGGTCTGGGATTGCAGGATCATTGCTGCAGCTTCTTTTTTCAGTAACATCTGTGCTAATGACTCTTCGGGAGCCAGCATCGGCTATTCTTGCAAGAATTGCTCAGTCTGAATCTATTCTTGTTAACCAGGATGTTGCTCAGCAGATGCTTTCACTCCTGAACCTTTCCAGCCCAATAATTCAAGGCCATCTCTTAGAAGCTCTAAGTAGCATTGCTGCACATCCTCGCGCCTCTAAAGTGAGAAGAAAAATGAAAGAAAAAGGAGCACTTCAGCTAATCTTGCCCTTTCTGAAGGAAACTAACACTACAATAAGAAGCAAGGCCCTTAGTTTGCTCTATACTCTCTCCAAAGATCTTACAGATGAGTTGAATGAACATCTTGATGAAGCTCATCTTATTCACATTGTTAATATTGTCTCATCATCAACATCGGATAGCGAAAAGGCTGCTGCTCTTGGCATACTGAGTAATCTTCCAGTTAGTGACAAAAAGGTGACAGATATTCTGAAGAAAGCAAATTTGTTGTCTATTTTAATATCCAATATGTCTTCGAGCACTGGAAGCAACTCGCCTGTGACAAGAACCTTAGCTGAAATTGTTGCTTGTGTTATAGTTAGGTTCACAAATCCTTCTGACAAGAAGCTTCAGCTCTATTCAGCTGAACAAGGGGTGATTCCTTTGCTTGTGAAACTTCTCTCAAGTGGTTCATCAATTGCAAAATTCAGAGCTGCGACTGCTTTGGCTCAGCTATCACAAAATTCTTTGTCCCTCAGGAGGAGTAGGAAGTCAAGGTGGTTTTGTGTTAATCCATCAGTAGAAGCATATTGTGATGTGCATAATGGCTTTTGCTATGTGAATACCACATTTTGTCTGGTCAAGGCAGGTGCTGTTTCGGCACTCATCAAAATACTTGAAGATAAGGAGTGGGAAGCAGTTGAGGCTGCTCTGATTGCTCTTTCAACTCTTCTGCAAGACGAAATCTGGGAAGGCGGCGTCAACTGTATAGCCAAGAACTCAGGTGTACAAGCTATTATTAAGATTTTAGAAGCAGGTGATGTGAAGGTTCAGGAAAAAGCACTATGGATGTTGGACAGAATATTCAGGATTGAAGAGCACAGAGTAAAATATGGAGCATCAGCTCAGGTTTTTCTTATTGATTTGGCTCAGACGTGCGATTCTCGATTGAAGTCAACTGTTGCAAAAGTTTTGGCAGAGCTGGAGCTCCTGCAAGTTCAATCAAGTTATTTCTGA 2451 0.4145 MSELVALVDEVASFAMNPEIEIDAFTEFAMLVEKLAPIFSDLSNKSTVIENNPSIRKSLESIETSLSRAIALTKSSSLKDPIKYIEDTTHDIGRSLGLLLLELSTDFREKIGTLQKQFMNARFGGNMSLPSSPVSLEFANDVSGGGEIQEETVNVTIEDVVLQLKNGNDEEFAVALWRLKEFIRDEKLESCLINEEAVVSVLLNRLRSGKADNRLNIIQLLRNMALGNDETKEKMADTEFLSAVVKSLTRDAEERREAVGLLLELSDLPAVRRQIGRIQGCIVMLVSILNGSDPIASQGAAKLLDILSSNTQNALHMAEAGYFKPLVQYLKKGSDMNKILMATALSRLVLTDQSKLSLGKDGAVEPLVNMFHTGKLESKLSALNALQNLSSVTENVQLLIRSGIAGSLLQLLFSVTSVLMTLREPASAILARIAQSESILVNQDVAQQMLSLLNLSSPIIQGHLLEALSSIAAHPRASKVRRKMKEKGALQLILPFLKETNTTIRSKALSLLYTLSKDLTDELNEHLDEAHLIHIVNIVSSSTSDSEKAAALGILSNLPVSDKKVTDILKKANLLSILISNMSSSTGSNSPVTRTLAEIVACVIVRFTNPSDKKLQLYSAEQGVIPLLVKLLSSGSSIAKFRAATALAQLSQNSLSLRRSRKSRWFCVNPSVEAYCDVHNGFCYVNTTFCLVKAGAVSALIKILEDKEWEAVEAALIALSTLLQDEIWEGGVNCIAKNSGVQAIIKILEAGDVKVQEKALWMLDRIFRIEEHRVKYGASAQVFLIDLAQTCDSRLKSTVAKVLAELELLQVQSSYF 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181438g00007 816 Pfam Armadillo-like 447 564 IPR006911 -
Stsc181438g00007 816 Gene3D - 143 254 IPR011989 -
Stsc181438g00007 816 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 160 816 - -
Stsc181438g00007 816 SMART arm_5 351 391 IPR000225 GO:0005515
Stsc181438g00007 816 SMART arm_5 684 724 IPR000225 GO:0005515
Stsc181438g00007 816 SMART arm_5 612 652 IPR000225 GO:0005515
Stsc181438g00007 816 SMART arm_5 477 517 IPR000225 GO:0005515
Stsc181438g00007 816 SMART arm_5 728 768 IPR000225 GO:0005515
Stsc181438g00007 816 SMART arm_5 228 267 IPR000225 GO:0005515
Stsc181438g00007 816 SMART arm_5 310 350 IPR000225 GO:0005515
Stsc181438g00007 816 SUPERFAMILY ARM repeat 156 414 IPR016024 -
Stsc181438g00007 816 Gene3D - 682 813 IPR011989 -
Stsc181438g00007 816 Gene3D - 439 661 IPR011989 -
Stsc181438g00007 816 Gene3D - 262 438 IPR011989 -
Stsc181438g00007 816 SUPERFAMILY ARM repeat 342 771 IPR016024 -
Stsc181438g00007 816 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 362 404 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181438g00007 Stsc-Chr181438 35349 38162 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181438g00007 167 816 U-box Gene Family AT1G76390 29.065 1.58e-49 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181438g00007 K08332 - gmx:100791453 1110.13