Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181436g00010 ATGGAAGAAATAATGGTGATGGGAACATTGGGGCTAAGTAGTGTATCTCCTCTTTCATCATCATCATCTTCTTCATCTTCTCCCACCACCACTGATAATAACAATAACATTAATAGCAGCATCAATAACCACCCTTCTTCTTCATCTTCATCTTCTTGTTCATCACTTTGTCTATCAAATGTCTCAACAAAAAGAACCGATTTGAGCACCGACCTCAGACTTGGCCTTAGCCTCTCTCCTTCATCACAACCAATAAGGGAGCAAAGAAGTTTTGATTGCTGGCCACCGGTGAAGTCAACATTGAGAAGCACCCTTGTTGAGGAAAGTCAAACATTATTAAGAGGCTCATCATCATCATCATCATCTCTGTTTGTGAAAGTGTACATGGAAGGCATCCCCATAGGTAGGAAGCTGAATCTGCGGGCACACCATAGTTACCATGCTCTTGTTAAAGCTCTTTCTCATATGTTCAAGACCACCATACTCTGCCCTGGCTCTCATCAATTACCGCTAAAGTCTGGGAATGTTCATGTTCTTACTTATGAGGATCAAGAAGGAGATTGGATGATGGTTGGAGATGTACCATGGGAGATGTTCTTGACAAGTGTGAAGAAGCTGAAGATCACAAGAGCTGACAGATGCTAA 645 0.4202 MEEIMVMGTLGLSSVSPLSSSSSSSSSPTTTDNNNNINSSINNHPSSSSSSSCSSLCLSNVSTKRTDLSTDLRLGLSLSPSSQPIREQRSFDCWPPVKSTLRSTLVEESQTLLRGSSSSSSSLFVKVYMEGIPIGRKLNLRAHHSYHALVKALSHMFKTTILCPGSHQLPLKSGNVHVLTYEDQEGDWMMVGDVPWEMFLTSVKKLKITRADRC 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181436g00010 214 Gene3D - 116 214 - -
Stsc181436g00010 214 Pfam AUX/IAA family 28 210 IPR033389 -
Stsc181436g00010 214 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 68 212 IPR003311 GO:0005634|GO:0006355
Stsc181436g00010 214 MobiDBLite consensus disorder prediction 13 51 - -
Stsc181436g00010 214 ProSiteProfiles PB1 domain profile. 122 213 IPR000270 GO:0005515
Stsc181436g00010 214 SUPERFAMILY CAD & PB1 domains 117 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181436g00010 Stsc-Chr181436 51259 52300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181436g00010 32 208 B3 DNA Binding Superfamily AT4G23980 29.208 1.49e-12 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Stsc181436g00010 AUX_IAA 1.7e-36 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181436g00010 K14484 - gmx:100527448 208.764