Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181436g00006 ATGTTACCCACCCGAAAATTTGGCTTTGATGTAAAGGATGAAATGAGTAACCACATAGCGTCGCAAGAAGCAAGAATCTTGGAGGATCAACAACAAGTACAATTTGAAGCTTCTTGCAAGAAAGCTAGAGTGTCCATAAGAGCAAGATCAAATTTTCCCATGATGGTTGATGGGTGCCAATGGAGAAAATATGGACAAAAAACATCAAAGGGAAATCCTTGTCCTCGAGCCTACTATCGTTGTAGCATGTCACAAACGTGTCCAGTTCGTAAGCAGGTGCAAAGGTGTGCGATGGATGAGACAGTTCTGATCACAACATATGAGGGGAATCACAATCATCCACTCCCAGAAGCAGCAAGATCCATAGCCAACACAACATCATCAGCATTAAACATGTTCCTTTCTGGCTCCATCACCACCACCACTAACAGTACTACTTCACTTTCAAATCCAACCCTATTCTCTTCACTATCTACTTCATCTTCATCATCATCATGTCCCACTCTAACACTAGACTTAACTACTCAACAACAACCCTTCAATCTTATTGCGTCATCAAACCACACACAACCATTACTATTCCCTGTGCCTCTAAATGGAAGCTACACTGAACAACAACAACAAGGAATGCTGTACTTTTCTTCTAATAGTAATAATAAGCTTCCATTATCAGAACAAAAGAACAACCTTGCATTGGTGGATGTTGTTAGTGCTGCTTTAACCAATGATCCTTCTCTTAAGGAAGCATTAGTTGCTGCCTTTTCCTCACTCACTCAGAATAACAACATAATCATCAATGAACATATTTAA 810 0.4 MLPTRKFGFDVKDEMSNHIASQEARILEDQQQVQFEASCKKARVSIRARSNFPMMVDGCQWRKYGQKTSKGNPCPRAYYRCSMSQTCPVRKQVQRCAMDETVLITTYEGNHNHPLPEAARSIANTTSSALNMFLSGSITTTTNSTTSLSNPTLFSSLSTSSSSSSCPTLTLDLTTQQQPFNLIASSNHTQPLLFPVPLNGSYTEQQQQGMLYFSSNSNNKLPLSEQKNNLALVDVVSAALTNDPSLKEALVAAFSSLTQNNNIIINEHI 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181436g00006 269 Pfam WRKY DNA -binding domain 57 114 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181436g00006 269 SMART WRKY_cls 55 115 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181436g00006 269 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 23 259 IPR044810 GO:0003700
Stsc181436g00006 269 Gene3D WRKY domain 39 117 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181436g00006 269 ProSiteProfiles WRKY domain profile. 50 116 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181436g00006 269 FunFam probable WRKY transcription factor 31 40 117 - -
Stsc181436g00006 269 SUPERFAMILY WRKY DNA-binding domain 49 116 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181436g00006 Stsc-Chr181436 20766 22292 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181436g00006 31 174 WRKY Transcription Factor Family AT4G04450 60.784 1.74e-59 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc181436g00006 WRKY 1.8e-23 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181436g00006 - - ahf:112722714 326.25