Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181435g00003 ATGACAATTCCTGAAAAGAATCCCTACAAGTTAGTGCCTTTCACGGAACAAGACGCTGCTAGACTCTTACAAAGGTACGATGCAACGACGGTGATAACTTTACTTCAGGAGGTGGCTCAGTCTCAGTATCCGAACGCAAAAATCGATTGGAATGATTTGGTGAAGAGAACCTCAACTGGAATCTCTAATGCCAGGGAGTATCAGATGCTGTGGCGCCACTTAGCCTACCGTCATGACCTTGTCTCAAATCTCGAAAATGGCGCTGAGCCTCTGGATGATGATAGTGACCTAGAATATGAGGTTGAAGCATTACCCGGTATAAGTGCTGAAGTAGCATCAGAGACTGTGGCATGTGTGAAGGTAATGATTGATTCTCATTCACTAAGTGAATCAACACCTAGTAGTTCAACAATTGAGGCTCCACTGACTATACATGCTCCAGTTTGCAATTCATCTAGAACTTCTAACAAGAGCTCACAATCTACTAGTTTGATGCAAGGGACAGAGATTATTTTTCCAGTTACTATTAAGAGACAGACACTGCCAAATGTATCATCAACAGACAATATTGAAAGCAAGGGATTAGATGGCAGCAACATGGCTTCCAAGAAGAGGAGAATGACATGGTCAGAGGAAGAGGACAATCTACTGCGAGATGCTGTTCAAAGATTTGGTGAAGGGCATTGGGCTACCATTGCAAAAGGAGAAAACTTTCATGTTAAGAGAACTGCTGCACAGATTTCTCATAGGTGGAACTTCTTGCGAAAGAAGGATGATAGTACCAATTCAGGATCCATCTTGACCAGCACGCGTTATAATACTGCTGAACAACTGGCAACTCGTCACTCATTATCTTTAGCCCTTGATATGCCATTAAAAAAGTTGACTGCTCCTGGAGTGAACAGTAGGAGACCCTTGAATATGTCTGGTAAACGCTCATTGCAGCATGTTGCTATAGAATCTTCAACGCTTCATGGTAATGTTGTACCACCTCAGCATCCTTCTCAACAGTCTTTAGTGGGATCTTGTGGTTCCTCACTGAAATCTACATTAGTCTCTGAAAAACCGTTGTCGGAAGTTACCCCAACTCTTAACCCTATGGTAAAAGGCACCACAGTAGTCTCTGGTGCCCAAATAGTTTCAACGTCAGATTCTGCATCGCGAGTAAAGGTTTCACATGGAAATGTGGTTGCTACAACTAGTTCTTTGACAAAGTCATCAACTCCTGCTAGTTTACCTCCGGAATCAAAGATACAATTCCGCACAGGTCCAAGTTCAGCACCTGTTCACACCAAAAAAACTATTGTTATTGCCTGTCCTGCATCAGGCATTAAGCCCCCTAAAGCTTCCTCTTTGAAAATGGAGAAGTCGCCTGCAGCTTTGTCTGCCTCACCTGAGCAGGAAAAACATGATAACTCTCTGGTTTATGAAGCTCCAACAAAGCAAGAAGTTCAAGTTGCTAATCCTAATCGCACTGCAATGAACAGGATGGTCCAAATTGATAGGAAATTAGATCATGAGAGGAGCATGCATGGTCCTCCCAAAAAAGGTAAGGAAATTACAAGTAGTAAGGAAGTAACGGAAGGGAATAAATCAGGGAACTGCTAA 1608 0.4279 MTIPEKNPYKLVPFTEQDAARLLQRYDATTVITLLQEVAQSQYPNAKIDWNDLVKRTSTGISNAREYQMLWRHLAYRHDLVSNLENGAEPLDDDSDLEYEVEALPGISAEVASETVACVKVMIDSHSLSESTPSSSTIEAPLTIHAPVCNSSRTSNKSSQSTSLMQGTEIIFPVTIKRQTLPNVSSTDNIESKGLDGSNMASKKRRMTWSEEEDNLLRDAVQRFGEGHWATIAKGENFHVKRTAAQISHRWNFLRKKDDSTNSGSILTSTRYNTAEQLATRHSLSLALDMPLKKLTAPGVNSRRPLNMSGKRSLQHVAIESSTLHGNVVPPQHPSQQSLVGSCGSSLKSTLVSEKPLSEVTPTLNPMVKGTTVVSGAQIVSTSDSASRVKVSHGNVVATTSSLTKSSTPASLPPESKIQFRTGPSSAPVHTKKTIVIACPASGIKPPKASSLKMEKSPAALSASPEQEKHDNSLVYEAPTKQEVQVANPNRTAMNRMVQIDRKLDHERSMHGPPKKGKEITSSKEVTEGNKSGNC 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181435g00003 535 SUPERFAMILY Homeodomain-like 204 257 IPR009057 -
Stsc181435g00003 535 Gene3D - 198 262 - -
Stsc181435g00003 535 CDD SANT_TRF 209 256 - -
Stsc181435g00003 535 Pfam Myb-like DNA-binding domain 206 253 IPR001005 -
Stsc181435g00003 535 ProSiteProfiles Myb-like domain profile. 201 255 IPR001005 -
Stsc181435g00003 535 MobiDBLite consensus disorder prediction 446 471 - -
Stsc181435g00003 535 MobiDBLite consensus disorder prediction 402 427 - -
Stsc181435g00003 535 MobiDBLite consensus disorder prediction 500 535 - -
Stsc181435g00003 535 MobiDBLite consensus disorder prediction 500 525 - -
Stsc181435g00003 535 MobiDBLite consensus disorder prediction 185 207 - -
Stsc181435g00003 535 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 10 530 - -
Stsc181435g00003 535 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 201 259 IPR017930 -
Stsc181435g00003 535 SMART sant 205 257 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181435g00003 Stsc-Chr181435 8497 12026 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc181435g00003 Myb_DNA-binding 3.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181435g00003 - - aip:107606216 763.451