Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181431g00010 ATGGGCGAGTCAGATAACGAGTCAGGTGGTCAAGGAGGGAACGAGTTCTCATCATCAGGAGGAGGAGGAGGAGGATGCAGAGAACAGGACAGGCTTCTTCCGATAGCGAACGTGGGAAGGATCATGAAGAAGGCGCTTCCGGCGAACGCGAAGATCTCTAAGGAGGCGAAAGAGACGGTGCAAGAGTGTGTGTCTGAGTTCATCAGCTTCATAACAGGGGAGGCTTCCGACAAGTGCCAGAAGGAGAAGAGGAAGACGATCAACGGCGACGATCTCCTGTGGGCCATGACTACCCTTGGATTCGAGGACTATGTGGAGCCTCTCAAGATTTATCTGCACAAGTACAGGGAGATGGAAGGTGAGAAGACTTCCATTCTTGGCGGAAGACAGCACCAGTCTGATGATCATCCCGGCGGTGATGCTGCCACCGCCGGAGCTGTTTATGGTGCTGGTGCTGGTGGTGTGCCTTCTACTATGATGATGATGATGGGACACATTTATGGATCTGGAAATGGATCAGCATCTTCTACTAGGTAG 537 0.5233 MGESDNESGGQGGNEFSSSGGGGGGCREQDRLLPIANVGRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKIYLHKYREMEGEKTSILGGRQHQSDDHPGGDAATAGAVYGAGAGGVPSTMMMMMGHIYGSGNGSASSTR 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181431g00010 178 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 32 96 IPR003958 -
Stsc181431g00010 178 FunFam Nuclear transcription factor Y subunit B-3 23 144 - -
Stsc181431g00010 178 SUPERFAMILY Histone-fold 29 139 IPR009072 GO:0046982
Stsc181431g00010 178 MobiDBLite consensus disorder prediction 123 142 - -
Stsc181431g00010 178 MobiDBLite consensus disorder prediction 1 29 - -
Stsc181431g00010 178 MobiDBLite consensus disorder prediction 1 18 - -
Stsc181431g00010 178 Gene3D Histone, subunit A 24 144 IPR009072 GO:0046982
Stsc181431g00010 178 PRINTS CCAAT-binding transcription factor subunit A signature 79 97 - -
Stsc181431g00010 178 PRINTS CCAAT-binding transcription factor subunit A signature 60 78 - -
Stsc181431g00010 178 PRINTS CCAAT-binding transcription factor subunit A signature 98 116 - -
Stsc181431g00010 178 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 7 130 IPR027113 GO:0001228|GO:0006355|GO:0016602
Stsc181431g00010 178 ProSitePatterns NF-YB/HAP3 subunit signature. 63 79 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181431g00010 Stsc-Chr181431 53292 54282 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181431g00010 1 130 CCAAT-HAP3 Transcription Factor Family AT4G14540 78.462 1.41e-70 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Stsc181431g00010 CBFD_NFYB_HMF 1.7e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181431g00010 K08065 - gmx:100305641 221.861