Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181431g00008 ATGGGGAATGTCAATGTCAATAATAATCATAACAACAACAACGCTGCTACTCATTCAGACGAAGAAGATGACGACGAAGACGAACAAGCTTCTTCTTTCGGTACTCTGCCCACAGCTCCCGCTGAATTGATGGGCCAATCTCCACCCACCAGCCCCAGAGCTACCCATTCTCCCTTCATCTTCGCTCCTCAAGCTCCGGTGGTTCCACTACAAAGACCAGATGAGATGCATATTCCAAATCAATCCTGGACGCAATCTACCTCAGGGTATGAAGATATGTACTGTGAACTTGGAATACCAACAATGATTACCTGGAGTTATGGTGGGAAAGAAGTAGCAGTGGAAGGGTCATGGGATGGTTGGAAATCAAGAATACGGTTGCAGAGATCAGGCAAAGACTTCACAATAATGAAGGTACTGCCTTCTGGAGTTTACCAATATAGATTTATTGTGGATGGACAGTGGAGGTACACTCCCGACTCACCATGGACACAGGAGGATGCAGGGAATGCTTACAATATCTTAGACTTGCAGGATTTTGTTCCTGAAGACATTGAAAGCATCTCAAGTTTTGAATCTCCTCAATCACCAGACTCAAGTTACAACAATTTACAGCTTAGTTCTGAGGATTATGCAAAGGAACCACCATTGGTTCCCCCACACTTGCAAATGACATTGCTAAATGTTCCTGTGACAAGTATGGAAACACAACCTCCTATGTCAAGACCTCAACATGGAGTGCTCAATCATCTTTACATGCAGAAAAGAAAGAGCACTCCGTCAGTGGTTGCACTCGGGTCAACACATCGGTTTCTTGCCAAGTATGTCACTGTGGTGCTGTACAAGTCTTTGCAGAGTTAA 861 0.4448 MGNVNVNNNHNNNNAATHSDEEDDDEDEQASSFGTLPTAPAELMGQSPPTSPRATHSPFIFAPQAPVVPLQRPDEMHIPNQSWTQSTSGYEDMYCELGIPTMITWSYGGKEVAVEGSWDGWKSRIRLQRSGKDFTIMKVLPSGVYQYRFIVDGQWRYTPDSPWTQEDAGNAYNILDLQDFVPEDIESISSFESPQSPDSSYNNLQLSSEDYAKEPPLVPPHLQMTLLNVPVTSMETQPPMSRPQHGVLNHLYMQKRKSTPSVVALGSTHRFLAKYVTVVLYKSLQS 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181431g00008 286 SMART AMPKBI_2 194 284 IPR006828 GO:0005515
Stsc181431g00008 286 MobiDBLite consensus disorder prediction 1 58 - -
Stsc181431g00008 286 Gene3D - 187 284 - -
Stsc181431g00008 286 MobiDBLite consensus disorder prediction 1 15 - -
Stsc181431g00008 286 CDD E_set_AMPKbeta_like_N 100 176 - -
Stsc181431g00008 286 Gene3D Immunoglobulins 95 181 IPR013783 -
Stsc181431g00008 286 SUPERFAMILY E set domains 99 184 IPR014756 -
Stsc181431g00008 286 Pfam 5'-AMP-activated protein kinase beta subunit, interaction domain 212 282 IPR006828 GO:0005515
Stsc181431g00008 286 Pfam Glycogen recognition site of AMP-activated protein kinase 99 178 IPR032640 -
Stsc181431g00008 286 SUPERFAMILY AMPKBI-like 181 283 IPR037256 -
Stsc181431g00008 286 PANTHER SNF1-RELATED PROTEIN KINASE REGULATORY SUBUNIT BETA-1 1 285 IPR043554 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181431g00008 Stsc-Chr181431 42551 45100 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181431g00008 109 179 Protein tyrosine phosphatase (PTP) family AT3G01510 35.616 5.32e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181431g00008 K07199 - gmx:100777497 431.795