Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181431g00005 ATGGGAATTGATGAGGCAAAACAGTCATTGCTTGCAAGAGATCATTTTCATGACAAAAGTGACCTCCAGAGAAGAAGGTCTACCAGGAATTATGGCACTGCTTCATCAGATTCATCCTCACAGACCATCAATAATCTCCAACGAAATAGTAATAATGTAATTACAGTAGTCCAGAATAATAATAACCCTTCAACACCAAACCCAGAATTTAATTTGAAACCAGTGTTGTTGTGGTTAACAATCTACCTAGGTGGAGGTACCCTATGCTTCTATCTGGTAAGTAACCAAATTGAAGGTATAAAAACCAATCCCTTTCTTGATGCACTTTACTTCTGTGTTGTGACTATGACCACTGTGGGTTATGGTGATCTTGTCCCCAAAAGCATTGTGTCAAAACTACTTGCATGCTTCTATGTCTTCACCGGAATGGCCATCGTTGGCTTGGTTCTTAGCAAGGCAGCAGATTACATTGTAGAGAAGCAAGAAATGTTGGTTGTTAAGGCCATGCACAAAGAGCTTGACAAAGAGTTTCAATCTAACAACAAGGCCAGACACAAGTTCTTGGTTGCAGTTTGCAGTTTCTTGGTGCTTATCACAGTGGGAGTGATCTTCCTTTCTTGTGTTGAGGATCTGGATCTTGTGGATGCATTGTATTGTGTTTGCTCCACGGTGACCACTTTGGGTTATGGAGATGAGAGCTTTTCAACTAGCATTGGTCGTGCTTTTGCTGTGTTATGGATATTGAGCAGCACCATTTGCTTAGCTCAATGCTTTGCTTATCTTGCTGAAATGCACACTGATGAAAAGCAAAAATCACTTGCCAAAATGATTCTTTCTAGAAAAATCTCACGTCCTGATCTTGAGGCTGCTGATCTTGATGGAGACAAATCTGTAAGTGCTGCAGAGTTTATTGTATACAAGTTGAAGGAAATGGGAAAGATCAACGAAGATGATGTGTCGAATGTAATGGAATGGTTTAGAAAGCTAGATATAGATAAATCAGGAACTCTCACAGAAGCTGATATCATTTGA 1032 0.3992 MGIDEAKQSLLARDHFHDKSDLQRRRSTRNYGTASSDSSSQTINNLQRNSNNVITVVQNNNNPSTPNPEFNLKPVLLWLTIYLGGGTLCFYLVSNQIEGIKTNPFLDALYFCVVTMTTVGYGDLVPKSIVSKLLACFYVFTGMAIVGLVLSKAADYIVEKQEMLVVKAMHKELDKEFQSNNKARHKFLVAVCSFLVLITVGVIFLSCVEDLDLVDALYCVCSTVTTLGYGDESFSTSIGRAFAVLWILSSTICLAQCFAYLAEMHTDEKQKSLAKMILSRKISRPDLEAADLDGDKSVSAAEFIVYKLKEMGKINEDDVSNVMEWFRKLDIDKSGTLTEADII 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181431g00005 343 MobiDBLite consensus disorder prediction 19 44 - -
Stsc181431g00005 343 Gene3D - 287 343 - -
Stsc181431g00005 343 ProSitePatterns EF-hand calcium-binding domain. 330 342 IPR018247 -
Stsc181431g00005 343 Gene3D - 167 285 - -
Stsc181431g00005 343 Pfam Ion channel 78 158 IPR013099 -
Stsc181431g00005 343 Pfam Ion channel 194 264 IPR013099 -
Stsc181431g00005 343 MobiDBLite consensus disorder prediction 27 44 - -
Stsc181431g00005 343 SUPERFAMILY Voltage-gated potassium channels 181 279 - -
Stsc181431g00005 343 PRINTS Two pore domain K+ channel signature 225 234 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc181431g00005 343 PRINTS Two pore domain K+ channel signature 114 142 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc181431g00005 343 ProSitePatterns EF-hand calcium-binding domain. 291 303 IPR018247 -
Stsc181431g00005 343 Gene3D - 71 166 - -
Stsc181431g00005 343 ProSiteProfiles EF-hand calcium-binding domain profile. 317 343 IPR002048 GO:0005509
Stsc181431g00005 343 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 76 321 IPR003280 GO:0005267|GO:0016020|GO:0071805
Stsc181431g00005 343 SUPERFAMILY Voltage-gated potassium channels 75 164 - -
Stsc181431g00005 343 SUPERFAMILY EF-hand 287 342 IPR011992 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181431g00005 Stsc-Chr181431 13081 14201 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181431g00005 57 343 Ion Channels AT5G55630 55.814 2.07e-112 329
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181431g00005 K05389 - gmx:100799492 418.313