Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181429g00010 ATGGGAAGATCACCATGCTGTGACAAAGTGGGTTTGAAGAAAGGACCATGGACACCAGAGGAAGATCAGAAGCTCTTAGCTTATATTGAAGAACATGGTCATGGAAGCTGGCGTGCTTTGCCAGCAAAAGCAGGGCTTGAAAGGTGTGGGAAGAGCTGCAGATTGAGATGGACGAATTATCTAAGGCCTGATATAAAGAGGGGAAAGTTCAGTTTGCAAGAAGAACAAACCATCATTCAGCTTCATGCACTCTTAGGAAACAGGTAA 267 0.4457 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIEEHGHGSWRALPAKAGLERCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNR 88
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181429g00010 88 Gene3D - 13 66 - -
Stsc181429g00010 88 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 88 - -
Stsc181429g00010 88 CDD SANT 16 61 IPR001005 -
Stsc181429g00010 88 FunFam MYB-related transcription factor 13 66 - -
Stsc181429g00010 88 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Stsc181429g00010 88 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Stsc181429g00010 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Stsc181429g00010 88 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 88 IPR017930 -
Stsc181429g00010 88 SUPERFAMILY Homeodomain-like 15 88 IPR009057 -
Stsc181429g00010 88 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181429g00010 Stsc-Chr181429 78836 79216 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181429g00010 1 88 MYB Transcription Factor Family AT5G15310 94.318 1.53e-59 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Stsc181429g00010 Myb_DNA-binding 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181429g00010 K09422 - zju:107412894 191.045