Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181429g00009 ATGGAGAATGCTAGAATGCTAAGAGAGAAAGAACAAAAGTTCGAATTGCCATCCGGCTTTCGGTTTCATCCGACCGATGAAGAGCTCATAAATTACTACCTTGTTAAGAAGGTTCTTGATGATAAACACTTCTTTTCTATAGCAATTGCTGATGCTGATATGAACAAGTGTGAGCCATGGGATTTACCCGGTTTGGCGAAAATGGGCGAAACGGAATGGTATTTCTTTTGTATGAAGGATAGAAAATACCCAACCGGCCAAAGGACAAATAGGGCAACCGATGCCGGATATTGGAAGGCCACGGGCAAAGACAAGGAGATATCCATGGAGAACAAAAAGATTGGGATGAAGAAGACTCTTGTTTTCTACAAAGGAAGAGCTCCAAGAGGTGAAAAGACTAATTGGGTCATGCATGAATATAGACTTGAAGGGAGCAACTCTGTTTATAATCTGCAACAGCCTGAAAGAAGTGGTGAATGGGTTATATGCAGAGTATTTGAGAAGGGCAATAATGGAAAAAGAGTGAATATTTCAAACTCTTTGGGTCAGGAACCATTGCCATTACCAAAACCTACTCTTTTGATGCCTCCTTTGATTGATTATTCGTCGTCGAGAACCACCCCCGGCGAGTTATCTCAGGCAACATGCTACTCCGATCCCAATCACGCCGAAGGCCGGAACAATTTGCATGATGACATAGTTGAAAGCAGGGAAACTCCTAATGAACAATTAATTCAGATTCCAAACCAAATTGAGAAGCGTGAACCGGATTATTATTCTCTGCGTCAAGAAAACAATGGATCAATTGCCAGGCAGAATCAGAAATCAGAGTTTGATGCTGATATATCATCTTTGATTTACAACAATGACATGTTTTACAGGTTCTTTGGGAACCAAGAACATTCATCTTCAGCTTCTGCAGACATTTGCAACCTATGGAATTACTAG 948 0.4103 MENARMLREKEQKFELPSGFRFHPTDEELINYYLVKKVLDDKHFFSIAIADADMNKCEPWDLPGLAKMGETEWYFFCMKDRKYPTGQRTNRATDAGYWKATGKDKEISMENKKIGMKKTLVFYKGRAPRGEKTNWVMHEYRLEGSNSVYNLQQPERSGEWVICRVFEKGNNGKRVNISNSLGQEPLPLPKPTLLMPPLIDYSSSRTTPGELSQATCYSDPNHAEGRNNLHDDIVESRETPNEQLIQIPNQIEKREPDYYSLRQENNGSIARQNQKSEFDADISSLIYNNDMFYRFFGNQEHSSSASADICNLWNY 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181429g00009 315 Gene3D NAC domain 25 173 IPR036093 GO:0003677|GO:0006355
Stsc181429g00009 315 ProSiteProfiles NAC domain profile. 16 168 IPR003441 GO:0003677|GO:0006355
Stsc181429g00009 315 SUPERFAMILY NAC domain 12 168 IPR036093 GO:0003677|GO:0006355
Stsc181429g00009 315 FunFam NAC domain-containing protein 100-like 25 172 - -
Stsc181429g00009 315 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Stsc181429g00009 315 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181429g00009 Stsc-Chr181429 63414 64539 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181429g00009 7 231 NAC Transcription Factor Family AT5G39610 54.113 8.33e-80 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Stsc181429g00009 NAM 5.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181429g00009 - - gmx:100782172 379.793