Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181428g00003 ATGAAGTTGAGCATCCTAAGAAGGCTTTGGGATGGGCAGCAAGAGATTCTACTGGTTTTCTTTCCCCTTTTAACTTCTCAAGAAGATGTGAGATTGAAAATATTGTACTGTGGAATATGCCACACTGACATCCACTTTCTCAAGAACGACTTTGGCGTTTCCATTTATCCATTAGTTCCAGGGCATGAGATAGTTGGGGAAGTGACAGAGGTTGGAAACAAGGTAGAAAAGTTCAAGATTGGGGACAAAATAGGTGTTGGAACCATCGTTGTCTCATGCCGTTCATGCCAAAACTGTGCTGACAATCTTGAGAATTATTGTCCAAAGAAAATCCCCACCTATGGCTTCAAGAACACGGATGGCACCATGACATATGGAGGCTTTTCAGATTCAATGGTGGCGCATGAGGACTTCGTGGTTCGAATCCCGGACGGATTACCTCTTGATGCAGCTGCTCCTCTGCTGTGTGCTGGGATTACAGTTTATAGCCCGCTCCGGTATTTCGGGCTTGATAAGCCCGGTTTACATCTCGGGGTGGTTGGTCTTGGCGGATTAGGCCACATGGCTGTTAAGTTTGCCAAAGCTTTTGGTGCTAAGGTCACTGTTATTAGTACCTCTCCTAATAAAAAGAAGGAGGCTTTGGAAAATTTGGGTGCTGATTCCTTTGTCATAAGCACTGACCAAGATCAGATGCAGGGTGTTATGGGTACAATGGATGGTATTATTGACACGGTTTCTGCAGATCATCCTCTGTTGCCTTTGCTTTGTTTGTTGAAGTCTCATGGAAAGCTTGTATTGGTTGGTGCAGTTACCAGCCTAGAGCTGCCCGTCCTTCCTTTACTCATGGAGAGAAGATTAATAGCTGGGAGTAGCATCGGAGGATTAAAGGAGACTCAAGAAATGATTGACTTTGCGGCTCAACATAATGTGAAAGCAGACATTGAGGTCATTCCCATGGACTATGTCAACACTGCAATGGAGCGTCTTCTCAAAGCAGATGTCAAGTATAGATTTGTCATTGATATAGCAAACACACTCAACTCTACCTCTTAA 1053 0.4425 MKLSILRRLWDGQQEILLVFFPLLTSQEDVRLKILYCGICHTDIHFLKNDFGVSIYPLVPGHEIVGEVTEVGNKVEKFKIGDKIGVGTIVVSCRSCQNCADNLENYCPKKIPTYGFKNTDGTMTYGGFSDSMVAHEDFVVRIPDGLPLDAAAPLLCAGITVYSPLRYFGLDKPGLHLGVVGLGGLGHMAVKFAKAFGAKVTVISTSPNKKKEALENLGADSFVISTDQDQMQGVMGTMDGIIDTVSADHPLLPLLCLLKSHGKLVLVGAVTSLELPVLPLLMERRLIAGSSIGGLKETQEMIDFAAQHNVKADIEVIPMDYVNTAMERLLKADVKYRFVIDIANTLNSTS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181428g00003 350 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 61 75 IPR002328 GO:0008270|GO:0016491
Stsc181428g00003 350 Gene3D - 157 312 - -
Stsc181428g00003 350 FunFam Cinnamyl alcohol dehydrogenase 157 312 - -
Stsc181428g00003 350 Pfam Alcohol dehydrogenase GroES-like domain 28 141 IPR013154 -
Stsc181428g00003 350 FunFam Putative cinnamyl alcohol dehydrogenase 6 313 342 - -
Stsc181428g00003 350 Gene3D - 26 342 - -
Stsc181428g00003 350 SMART PKS_ER_names_mod 12 340 IPR020843 GO:0016491
Stsc181428g00003 350 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 146 311 IPR036291 -
Stsc181428g00003 350 PANTHER ALDEHYDE REDUCTASE 25 345 IPR047109 GO:0016616
Stsc181428g00003 350 CDD CAD1 28 341 IPR047109 GO:0016616
Stsc181428g00003 350 Pfam Zinc-binding dehydrogenase 184 306 IPR013149 -
Stsc181428g00003 350 SUPERFAMILY GroES-like 27 174 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181428g00003 Stsc-Chr181428 1656 3633 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181428g00003 25 347 Monolignol Biosynthesis Gene Families AT4G37990 68.827 3.27e-151 428
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181428g00003 K23232 - gmx:100816901 478.789