Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181428g00002 ATGGCTACTGCTGCATCACAACATGAAGTTGAGCATCCTAAGAAGGCTTTGGGATGGGCAGCAAGAGATTCTACTGGTTTTCTTTCCCCTTTTAACTTCTCAAGAAGGGAAAATGGTGAGAAAGATGTGAGATTGAAAATATTGTACTGTGGAATATGCCACACTGACATCCACTTTCTCAAGAACGACTTTGGCGTTTCCATTTATCCATTAGTTCCAGGGCATGAGATAGTTGGGGAAGTGACAGAGGTTGGAAACAAGGTAGAAAAGTTCAAGATTGGGGACAAAATAGGTGTTGGAACCATCGTTGTCTCATGCCGTTCATGCCAAAACTGTGCTGACAATCTTGAGAATTATTGTCCAAAGAAAATCCCCACCTATGGCTTCAAGAACACGGATGGCACCATGACATATGGAGGCTTTTCAGATTCAATGGTGGCGCATGAGGACTTCGTGGTTCGAATCCCGGACGGATTACCTCTTGATGCAGCTGCTCCTCTGCTGTGTGCTGGGATTACAGTTTATAGCCCGCTCCGGTATTTCGGGCTTGATAAGCCCGGTTTACATCTCGGGGTGGTTGGTCTTGGCGGATTAGGCCACATGGCTGTTAAGTTTGCCAAAGCTTTTGGTGCTAAGGTCACTGTTATTAGTACCTCTCCTAATAAAAAGAAGGAGGCTTTGGAAAATTTGGGTGCTGATTCCTTTGTCATAAGCACTGACCAAGATCAGATGCAGGGTGTTATGGGTACAATGGATGGTATTATTGACACGGTTTCTGCAGATCATCCTCTGTTGCCTTTGCTTTGTTTGTTGAAGTCTCATGGAAAGCTTGTATTGGTTGGTGCAGTTACCAGCCTAGAGCTGCCCGTCCTTCCTTTACTCATGGAGAGAAGATTAATAGCTGGGAGTAGCATCGGAGGATTAAAGGAGACTCAAGAAATGATTGACTTTGCGGCTCAACATAATGTGAAAGCAGACATTGAGGTCATTCCCATGGACTATGTCAACACTGCAATGGAGCGTCTTCTCAAAGCAGATGTCAAGTATAGATTTGTCATTGATATAGCAAACACACTCAACTCTACCTCTTAA 1092 0.4432 MATAASQHEVEHPKKALGWAARDSTGFLSPFNFSRRENGEKDVRLKILYCGICHTDIHFLKNDFGVSIYPLVPGHEIVGEVTEVGNKVEKFKIGDKIGVGTIVVSCRSCQNCADNLENYCPKKIPTYGFKNTDGTMTYGGFSDSMVAHEDFVVRIPDGLPLDAAAPLLCAGITVYSPLRYFGLDKPGLHLGVVGLGGLGHMAVKFAKAFGAKVTVISTSPNKKKEALENLGADSFVISTDQDQMQGVMGTMDGIIDTVSADHPLLPLLCLLKSHGKLVLVGAVTSLELPVLPLLMERRLIAGSSIGGLKETQEMIDFAAQHNVKADIEVIPMDYVNTAMERLLKADVKYRFVIDIANTLNSTS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181428g00002 363 CDD CAD1 18 354 IPR047109 GO:0016616
Stsc181428g00002 363 SMART PKS_ER_names_mod 20 353 IPR020843 GO:0016491
Stsc181428g00002 363 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 159 324 IPR036291 -
Stsc181428g00002 363 FunFam Cinnamyl alcohol dehydrogenase 170 325 - -
Stsc181428g00002 363 SUPERFAMILY GroES-like 23 187 IPR011032 -
Stsc181428g00002 363 Gene3D - 170 325 - -
Stsc181428g00002 363 Pfam Alcohol dehydrogenase GroES-like domain 41 154 IPR013154 -
Stsc181428g00002 363 Gene3D - 19 355 - -
Stsc181428g00002 363 FunFam Putative cinnamyl alcohol dehydrogenase 6 326 355 - -
Stsc181428g00002 363 Pfam Zinc-binding dehydrogenase 197 319 IPR013149 -
Stsc181428g00002 363 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 74 88 IPR002328 GO:0008270|GO:0016491
Stsc181428g00002 363 PANTHER ALDEHYDE REDUCTASE 8 358 IPR047109 GO:0016616
Stsc181428g00002 363 FunFam Uncharacterized protein 19 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181428g00002 Stsc-Chr181428 1488 3633 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181428g00002 14 360 Monolignol Biosynthesis Gene Families AT4G37990 68.966 1.65e-165 465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181428g00002 K23232 - gmx:100816901 537.339