Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181427g00009 ATGACTACTGATGCAGAAGCACTTCAGCAAATATGCCAGTCACTTCATACTTTATGGTCAGCTCCGTTTCGCATTACCATTGCCATGGTTCTTCTTTATCAACAACTTGGTGTTGCTTCCCTTTTGGGTGCTTTGATGCTAGTCCTTATGTTTCCGTTACAGACATTTATCATCAGCAGAATGCAGAAATTGTCTAAGGAAGGATTACAACGTACAGACAAGAGAATTGGCCTTATGAATGAAGTTTTGGCTGCTATGGACACTGTAAAATGTTATGCATGGGAGAGTAGTTTCCAGTCCAAAGTTCAGAATGTCCGAGATGATGAATTATCATGGTTTCGAAAAGCATCATTACTTGGAGCGTTGAATGGATTCATACTGAATAGTATTCCAGTTTTTGTAACTGTGATTTCATTTGGAATGTTCACCTTACTTGGTGGGAATTTGACACCTGCGAGAGCTTTTACATCACTTTCTCTGTTTGCTGTGCTTCGGTTTCCTCTCTTCATGCTTCCTAATATTATAACTCAGGCTGTTAATGCAAATGTATCGTTGAAGCGTTTGGAGGATTTGCTCTTAGCCGAAGAGAGAATACTTTTACCAAATCCACCACTTGAGCCAGGATTACCAGCCATCTCAATCAAAAACGGAAACTTCTCTTGGGATTCCAAGGCAGATAGGCCAACATTGGAAAACATAAACTTGGATATACCCGTTGGTAGCCTAGTTGCAGTTGTTGGCAGTACAGGAGAAGGGAAAACATCACTAGTATCTGCAATGCTGGGAGAACTCCCTGCAGTTGTAGGTTCAACTGTTGTTATGAGAGGGACAGTTGCTTACGTACCCCAAGTCTCTTGGATTTTTAATGCAACTGTGCGGGATAATGTTTTATTTGGTTCTGCCTTTGACCCAATAAGATATGAAAGGGCTATAGATGTGACTGAACTACGACATGACCTTGAGTTACTGCCTGGTGGTGATCTTACCGAAATTGGTGAAAGAGGTGTGAACATCAGTGGTGGCCAAAAGCAAAGAGTATCCATGGCTAGAGCTGTCTACTCCAAATCTGATGTGTACATCTTTGATGATCCTCTTAGTGCTCTAGATGCTCATGTTGCTAAACAGGTTTTTGATAAATGCATCAAGGCAGAACTGAGAGGGAAGACCCGAGTCCTTGTTACAAATCAACTGCACTTCCTTTCACAGGTGGATAGAATCATTTTGATCCATGAAGGAACTGTTAAAGAGGAGGGAACATTCGAGGAGCTCTCTAGCCAAGGGCCGTTGTTCCAAAAGCTTATGGAAAATGCTGGAAAGATGGAGGAGTATGAAGAAGAGAAGCTAGATACTGAAACTGCTGATCCAAAGTCCTCTTCAAAACTGGTGGCCAATGGAGAAATTAGTGATACTGCAAAGAGTGGAAGTAAGGCAAAAGAAGGAAAATCGGTCCTTATTAAACAGGAAGAGCGGGAAACAGGCGTTGTCAGTATGAAAGTTTTAGCAAGATACAAGAATGCATTAGGAGGCCTTTGGGTGGTTATAATACTCTTTGGATGCTATTTCCTGACAGAAGTGTTACGAATTTCAAGTAGCACATGGTTGAGCCACTGGACTGATCAGAGTGCTTCAGTGGGCTATGATCCTGGATTTTATAATCTGATATATGCAGCTCTATCATTTGCTCAGGTTATGGTGACTTTAACAAATTCTTATTGGTTGATCATATCAAGTCTATATGCTGCCAGGAGGTTGCATGAAGCCATGCTTCACTCCATATTACGAGCTCCGATGGTTTTTTTCCATACGAATCCACTTGGAAGAGTAATCAACAGGTTTGCAAAGGATTTAGGTGACATTGATCGTAATGTTGCCCCGTTTGTCAATATGTTTCTGGGTCAAGTTTCTCAGCTCCTTTCAACCTTCGTCCTGATAGGGATTGTCAGCACAATGTCCTTGTGGGCAATAATGCCATTGTTGGTACTATTTTATGGAGCATATCTGTACTATCAGAGCACCGCCCGTGAAGTAAAGCGCTTAGATTCAATTAGCAGATCCCCTGTTTATGCACAATTTGGGGAAGCACTTAATGGTCTATCAACAATTCGCGCTTACAAGGCTTATGACCGCATGGCTGATATCAATGGGAAGTCTATGGACAACAACATACGATTCACTCTTGTGAACATGAGCGGAAATCGATGGCTTGCAATTCGATTGGAAACTCTGGGAGGTCTCATGATATGGTTTACTGCAACCTTTGCAGTATTGCAGAATGGGAGGGCAGATAACCAGCAGGAATTTGCATCCACCATGGGGTTACTACTTAGTTATGCTTTGAACATAACAAGTTTGCTTACTGGTGTGCTCAGGCTTGCTAGTTTGGCTGAGAATAGTCTAAATGCTGTTGAGCGTGTTGGCACTTATATAGATTTGCCTTCAGAGGCTCCATCAATCATTGAGGATAGTCGCCCCCCTCCAGGCTGGCCCTCATCTGGATCAATCAGATTTGAGGATGTTGTACTTCGATACAGGCCTGAACTTCCTCCTGTTCTTCATGGCTTGAATTTCACAATTTTTCCAAGTGATAAGGTTGGCATTGTAGGAAGGACAGGAGCTGGAAAATCTAGCATGCTTAATGCTTTATTTCGAATAGTAGAATTGGAAAGAGGAAGAATATTAATTGATGACTGTGATATTGCAAAGTTTGGGCTGGCTGATCTGCGTAAAGTTCTTGGCATTATACCACAGTCCCCTGTTTTGTTTTCAGGAACTGTAAGATTTAATCTTGACCCTTTTAATGAACACAATGATGCTGACCTCTGGGAGGCTCTGGAGAGGGCACATTTGAAGGATGTGATTCGGAGGAATTCTTTGGGATTGGATGCTGAGGTCTCTGAGGCAGGTGAGAACTTCAGTGTTGGGCAGAGGCAACTGTTGAGTCTGNNNNNNNNNNCATTATTGCGTAGATCAAAGATATTAGTACTTGACGAAGCCACTGCAGCAGTTGATGTTAGAACGGATGCCCTCATACAGAAAACAATTCGAGAGGAATTTAAATCGTGCACCATGCTTATCATTGCTCATCGTCTTAACACCATTATAGACTGTGATCGGATTCTTTTGCTTGATGGTGGTAAGGTTCTTGAATATGATACCCCTGAGGAACTGCTATCAAATGAAGGCAGTTCGTTCTCTAAGATGGTGCAAAGTACAGGAGCCGCAAATGCCCAATATCTACGCAGCTTAGCACTCGGGAGTAAGTCAGATCGGGAAGAGAGTAAGCACAATGATGGCCAGAGAAAATGGCTTGCTTCATCTCGCTGGGCTGCTGCAGCCCAATTTGCCCTTGCCGTCAGTCTCACGTCGTCACAGAATGACCTAAAAAGATTGGAAGTGGAAGAAGAGAACAGTATACTCAAGAAAACAAGGGATGCTGTGATAACTTTGCAGGGGGTTTTGGAAAGGAAGCATGATAGAGAAATCGAAGAATCTTTAGACCGGTACCAAATGTCCCCAGACAGTTGGTGGTCATCACTCTACAAGATGATTGAAGGTCTTGCAATGATGAGTAGACTGGCCAGGAGCAGGCTTAATGAATCAGAATTCGATTTTGACGACAGATCAATTAACTTTGATCAAGCCAATATGTAG 3651 0.4245 MTTDAEALQQICQSLHTLWSAPFRITIAMVLLYQQLGVASLLGALMLVLMFPLQTFIISRMQKLSKEGLQRTDKRIGLMNEVLAAMDTVKCYAWESSFQSKVQNVRDDELSWFRKASLLGALNGFILNSIPVFVTVISFGMFTLLGGNLTPARAFTSLSLFAVLRFPLFMLPNIITQAVNANVSLKRLEDLLLAEERILLPNPPLEPGLPAISIKNGNFSWDSKADRPTLENINLDIPVGSLVAVVGSTGEGKTSLVSAMLGELPAVVGSTVVMRGTVAYVPQVSWIFNATVRDNVLFGSAFDPIRYERAIDVTELRHDLELLPGGDLTEIGERGVNISGGQKQRVSMARAVYSKSDVYIFDDPLSALDAHVAKQVFDKCIKAELRGKTRVLVTNQLHFLSQVDRIILIHEGTVKEEGTFEELSSQGPLFQKLMENAGKMEEYEEEKLDTETADPKSSSKLVANGEISDTAKSGSKAKEGKSVLIKQEERETGVVSMKVLARYKNALGGLWVVIILFGCYFLTEVLRISSSTWLSHWTDQSASVGYDPGFYNLIYAALSFAQVMVTLTNSYWLIISSLYAARRLHEAMLHSILRAPMVFFHTNPLGRVINRFAKDLGDIDRNVAPFVNMFLGQVSQLLSTFVLIGIVSTMSLWAIMPLLVLFYGAYLYYQSTAREVKRLDSISRSPVYAQFGEALNGLSTIRAYKAYDRMADINGKSMDNNIRFTLVNMSGNRWLAIRLETLGGLMIWFTATFAVLQNGRADNQQEFASTMGLLLSYALNITSLLTGVLRLASLAENSLNAVERVGTYIDLPSEAPSIIEDSRPPPGWPSSGSIRFEDVVLRYRPELPPVLHGLNFTIFPSDKVGIVGRTGAGKSSMLNALFRIVELERGRILIDDCDIAKFGLADLRKVLGIIPQSPVLFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLXXXXLLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILLLDGGKVLEYDTPEELLSNEGSSFSKMVQSTGAANAQYLRSLALGSKSDREESKHNDGQRKWLASSRWAAAAQFALAVSLTSSQNDLKRLEVEEENSILKKTRDAVITLQGVLERKHDREIEESLDRYQMSPDSWWSSLYKMIEGLAMMSRLARSRLNESEFDFDDRSINFDQANM 1216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181427g00009 1216 SUPERFAMILY ABC transporter transmembrane region 510 814 IPR036640 GO:0005524|GO:0016020
Stsc181427g00009 1216 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 834 1069 IPR003439 GO:0005524
Stsc181427g00009 1216 FunFam ABC transporter C family member 2 477 815 - -
Stsc181427g00009 1216 SMART AAA_5 239 413 IPR003593 GO:0016887
Stsc181427g00009 1216 SMART AAA_5 860 1054 IPR003593 GO:0016887
Stsc181427g00009 1216 Gene3D - 207 462 IPR027417 -
Stsc181427g00009 1216 Gene3D - 817 1071 IPR027417 -
Stsc181427g00009 1216 CDD ABCC_MRP_domain1 212 413 - -
Stsc181427g00009 1216 CDD ABCC_MRP_domain2 832 1053 - -
Stsc181427g00009 1216 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 514 797 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181427g00009 1216 Pfam ABC transporter 230 365 IPR003439 GO:0005524
Stsc181427g00009 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 209 435 IPR027417 -
Stsc181427g00009 1216 CDD ABC_6TM_ABCC_D2 513 809 IPR044726 GO:0140359
Stsc181427g00009 1216 FunFam Multidrug resistance-associated protein member 4 818 1071 - -
Stsc181427g00009 1216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 825 1061 IPR027417 -
Stsc181427g00009 1216 CDD ABC_6TM_ABCC_D1 1 188 IPR044746 GO:0140359
Stsc181427g00009 1216 FunFam ABC transporter C family member 2 206 452 - -
Stsc181427g00009 1216 MobiDBLite consensus disorder prediction 441 461 - -
Stsc181427g00009 1216 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 1 1075 - -
Stsc181427g00009 1216 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 214 436 IPR003439 GO:0005524
Stsc181427g00009 1216 ProSitePatterns ABC transporters family signature. 338 352 IPR017871 GO:0005524|GO:0016887
Stsc181427g00009 1216 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 180 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181427g00009 1216 Pfam ABC transporter 851 1000 IPR003439 GO:0005524
Stsc181427g00009 1216 Gene3D ABC transporter type 1, transmembrane domain 476 815 IPR036640 GO:0005524|GO:0016020
Stsc181427g00009 1216 Gene3D ABC transporter type 1, transmembrane domain 1 198 IPR036640 GO:0005524|GO:0016020
Stsc181427g00009 1216 Pfam ABC transporter transmembrane region 1 168 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181427g00009 1216 Pfam ABC transporter transmembrane region 513 758 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Stsc181427g00009 1216 SUPERFAMILY ABC transporter transmembrane region 1 192 IPR036640 GO:0005524|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181427g00009 Stsc-Chr181427 34915 43994 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181427g00009 831 1075 Calmodulin-binding Proteins AT2G36910 29.880 4.59e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181427g00009 - - gmx:100801762 2079.29