Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181426g00006 ATGGCAGCCATAAGTCTGAGGAAAGGTAACACCCGTCTTCCGCCGGAAGTGAACCGCGTTCTGTACGTCCGAAACCTGCCATTCAACATCACCAGCGAAGAGATGTACGACATCTTCGGAAAATACGGCGCCATTCGCCAGATCCGAATCGGCACCAACAAGGACACTCGCGGCACCGCCTTCGTCGTGTACGAGGATATCTACGACGCCAAGACCGCCGTCGACCACCTCTCCGGTTTCAACGTCGCGAATAGGTACCTCATCGTTCTGTATTACCAGCAAGCGAAGATGAGCAAGAAGTTCGATCAGAAGAAGAAGGAGGATGAGATTACGAAATTGCAAGAGAAGTACGGTGTCTCCACCAAGGATAAGTAG 375 0.52 MAAISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIYDAKTAVDHLSGFNVANRYLIVLYYQQAKMSKKFDQKKKEDEITKLQEKYGVSTKDK 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181426g00006 124 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 21 115 - -
Stsc181426g00006 124 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 87 IPR000504 GO:0003723
Stsc181426g00006 124 SMART rrm1_1 20 90 IPR000504 GO:0003723
Stsc181426g00006 124 SUPERFAMILY RNA-binding domain, RBD 7 102 IPR035979 GO:0003676
Stsc181426g00006 124 CDD RRM_SF3B14 17 93 IPR034150 -
Stsc181426g00006 124 Gene3D - 15 120 IPR012677 -
Stsc181426g00006 124 FunFam splicing factor 3B subunit 6-like protein 15 118 - -
Stsc181426g00006 124 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 94 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181426g00006 Stsc-Chr181426 31340 32065 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181426g00006 21 113 Eukaryotic Initiation Factors Gene Family AT2G36660 32.632 7.95e-08 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181426g00006 K12833 - gmx:100802877 245.358