Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181426g00001 ATGGCATTCACACTAGAGAGTGGTGAAGAGGAGAACATGAATATGAATAAGATGAACATGATGATGATGATGATGGATTCAACAACATCATCACAAAAGAAGTTCTCATCATCATCAACATCATCAACATCATCAGTGCCAGCACCATTCTTGACAAAGACATACCAACTAGTAGATGATCCTATGACTGACCACATAGTATCATGGGGGCATGATAGTCATTCCACATCATCATTTGTTGTTTGGAGGCCACCTGAGTTTGCCAGAGACCTTCTTCCAAACTATTTCAAACACAACAACTTCTCCAGCTTTGTTAGGCAGCTCAATACCTATGGATTCAAGAAGGTAGTTGCTGATAGGTGGGAATTTGCAAATGAGTATTTCAGAAAAGGAGCAAAGCATCTTCTTTGTGAAATTCATAGAAGAAAAACCCCTCATCACCATCATCATCATCAAGAGATCAATAATAACAATGAAGCTTTATATTGGATTGATTCTACTCCTACTACTACTACTACTATTCCCACTTCATTATTACTACCTTCTCCTAAATCATCATCATCATGTTCTTCATTATTAGGAGTAGGAGGAACTAGTGATCATCATATCTTAGCAGCACTTTCTGAAGACAATGAAAGGCTAAGGAGAAAGAATTTGATGCTCTTATCAGAATTAACTCACATGAAGAATCTCTACAATGATATCATTTACTTCATTCAAAATCATCTCAAACCTGCTTCTTCTCCCTTTCATAATAATAATATTAATAATCAAACAATTCCAAAGCTTGTGGAGTTGGATAATAATTCATCATCACCAAAGGGTATGAGTATTAGTGATGATGACGATGATGATTACAACAATAATAATTGTGGTTCTTGTGTGAAGCTCTTTGGTGTTCCTCTTAGTGGTAAAAAGAGATTACACCCAGATAATATTTTTCAACAACATTAA 954 0.3553 MAFTLESGEEENMNMNKMNMMMMMMDSTTSSQKKFSSSSTSSTSSVPAPFLTKTYQLVDDPMTDHIVSWGHDSHSTSSFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVVADRWEFANEYFRKGAKHLLCEIHRRKTPHHHHHHQEINNNNEALYWIDSTPTTTTTIPTSLLLPSPKSSSSCSSLLGVGGTSDHHILAALSEDNERLRRKNLMLLSELTHMKNLYNDIIYFIQNHLKPASSPFHNNNINNQTIPKLVELDNNSSSPKGMSISDDDDDDYNNNNCGSCVKLFGVPLSGKKRLHPDNIFQQH 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181426g00001 317 Gene3D - 42 144 IPR036388 -
Stsc181426g00001 317 SUPERFAMILY "Winged helix" DNA-binding domain 47 142 IPR036390 -
Stsc181426g00001 317 PRINTS Heat shock factor (HSF) domain signature 104 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc181426g00001 317 PRINTS Heat shock factor (HSF) domain signature 91 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc181426g00001 317 PRINTS Heat shock factor (HSF) domain signature 50 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc181426g00001 317 FunFam Heat stress transcription factor B-4 42 143 - -
Stsc181426g00001 317 Pfam HSF-type DNA-binding 50 142 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc181426g00001 317 Coils Coil 204 224 - -
Stsc181426g00001 317 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 39 268 IPR027725 -
Stsc181426g00001 317 SMART hsfneu3 46 142 IPR000232 GO:0003700|GO:0006355|GO:0043565
Stsc181426g00001 317 ProSitePatterns HSF-type DNA-binding domain signature. 92 116 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181426g00001 Stsc-Chr181426 550 2018 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181426g00001 45 309 HSF AT1G46264 47.452 1.32e-83 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Stsc181426g00001 HSF_DNA-bind 1.3e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181426g00001 K09419 - qsa:O6P43_014695 301.597