Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181424g00002 ATGGAAACAACATGCGTGGACACTTCTCTCACCCTCAACGTTGTTCCTCTCCACCACATGGGTATTTCGCCTGAGGTTTTGGTTGAAGAGTTGCATCGGCTAAGTTGTGAGAATAAGAAGCTAACAGAGACACTGAAGGAAGTGTATGAGGACTATCTTGCCTTGAAAACCAAGCTCAGTCAACTGAGCAACAACAATAACACGGTGAGTTCCGAGAAAGAAGCCGTGGCAGCGGGTTCGCCAACGCGGAAGAGAAAGACGGAGAGTGAGAGCTGCATGAGTGGCTATACTGATCAGTGCAACACCTTAACCAGTACGTACGAAGAAACAATCAAAAGAGCTAAGCATGAGGGTTCGCCAAATGTTTCCAAGATTGTTGTACGAACTGAAGCATCTGATACATCTAGCTTATATGTGAGGGATGGATATCAGTGGAGAAAATATGGGCAGAAAGTGACCAGAGATAACCCTTCTCCTAGGGCTTACTTCAGGTGCTCCTATGCTCCAAACTGCCCTGTCAAGAAGAAGGTGCAAAGGAGTGCAGAAGATCGAAGAATGCTGGTGGCAACATATGAAGGAGAGCACAACCATGAGCAAGTGCAAGATCCTTATTATTATTCATCATCAAGCCTGCAAAGTGATCATTATGAAAGCCCTACTAGAGTAGCTGACTTGGTCAAAAAGTCAGAATTATCAGAATCGGTTGACAATAAGAATAATAATGCAGAAAAGTCATGCATGAAGGTGCAGCGCCAGCTGTTAGCTCAACAAATGGCCACTTCTTTGACTAAGGATCCCAATTTCACAGCCGCACTTGCAACCGCCATTACAGGAAGAATTCTATCTTCTCCACGCTTCTCTCAATAA 867 0.4475 METTCVDTSLTLNVVPLHHMGISPEVLVEELHRLSCENKKLTETLKEVYEDYLALKTKLSQLSNNNNTVSSEKEAVAAGSPTRKRKTESESCMSGYTDQCNTLTSTYEETIKRAKHEGSPNVSKIVVRTEASDTSSLYVRDGYQWRKYGQKVTRDNPSPRAYFRCSYAPNCPVKKKVQRSAEDRRMLVATYEGEHNHEQVQDPYYYSSSSLQSDHYESPTRVADLVKKSELSESVDNKNNNAEKSCMKVQRQLLAQQMATSLTKDPNFTAALATAITGRILSSPRFSQ 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181424g00002 288 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 25 280 IPR044810 GO:0003700
Stsc181424g00002 288 SMART WRKY_cls 139 199 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181424g00002 288 SUPERFAMILY WRKY DNA-binding domain 137 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181424g00002 288 MobiDBLite consensus disorder prediction 65 90 - -
Stsc181424g00002 288 Gene3D WRKY domain 120 199 IPR036576 GO:0003700|GO:0006355|GO:0043565
Stsc181424g00002 288 FunFam WRKY transcription factor 40 123 201 - -
Stsc181424g00002 288 Pfam WRKY DNA -binding domain 141 198 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181424g00002 288 ProSiteProfiles WRKY domain profile. 134 200 IPR003657 GO:0003700|GO:0006355|GO:0043565
Stsc181424g00002 288 Coils Coil 31 65 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181424g00002 Stsc-Chr181424 36136 40211 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181424g00002 3 280 WRKY Transcription Factor Family AT1G80840 42.244 1.35e-60 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Stsc181424g00002 WRKY 2.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181424g00002 - - gmx:100127373 280.411