Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181423g00016 ATGAGAGACCCTTCAGAAAGTAGAGGTTGTGGTATGAATCTGATATCAGCATTGCTTGGTAGACATGGGTCATGTCCGAGAAAAATTGAAAGTTATTCCGATGATGATGATGCTCACAATCGAGGGAAGCGACGGTCAAAAACCAAAGATTCGAAACGGTCACGGAGTGATGTCTCTATTAATGCCACGGGCTCTGTTGCTTCTGCAACAAGCAATTACATGACTTCACAAATTTCCCAAAAGCAAAAGCATGTATTTGTAAGTGTGAACCAAATCCAACAAAGGAAACAACAACACCACCACCATGGTGAGGTAGTAGCAGCACCGATGGCAGTGTGTTCATCAGCTAAGTCATCAAAGGTGTCACCTGTAGAAGGATATGTCAATCAGGGAAAAAAGGTTCCGAAAGATGCTGTTGGATTATCAGGTGAGCTTGATAGCATGTTAAACGATTACCACAAGTCGAAGGGAAACAGCAGACTTGTTCGAGCTTCTTCTAGCAATGTGATGATACATGGTAACTTAGGTAACCTTAGACAAGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGAGGAGGAGGAGGAACAAACTATCCTAGCTCAAACAATCCAATGGATAAGGTGGAAAATGGTGGTGGTAGTAATAATAATAGGAACAAAAAGGTTACTAGCAATAGTAAAGAAGAATTGGATTCACTTTGTAGGGCTGTGTCTACTAGAATGGACCCAGAGCAATTGAAGATAATGGGGAATGAGGATTATAAGAATGGGAACTTTGCTGAGGCATTGTCTCTGTATGATGCAGCAATTGCAATTGATCCTAATAAGGCTGCCTATAGAAGCAACAGAAGTGCAGCATTAACAGCTCTTGGAAGGCTTTTGGAGGCTGTGTTTGAATGTCGAGAAGCCATTCAGATCGATCAGCGTTACCAAAGAGCTCATCATCGATTGGGAAACTTGTATTTTAGATTCTTAGCCGGACCAGAGGCTGATCCTGATGAGATTGCTAAAGTGAAGATTCTTCAGGTTCATCTAAACAAGTGCACCGAGGCTCGCAGGGTAGGAGATTGCAACACACTAATCACCGAAACCAACAAGGTTATATCATATGGTGCAGATTCTGCTCAACAGATATTTGCATTACAAGCGGAAGCACTCTTAAAGCTTCGTAGACATCAAGATGCAGAGAACATAATGTCGAAGTGCCCCAAATTTGATATTGATGAGTGTAGTAAGTTCTTTGGACCTATCTGCAATGCCAATTTGTTGGTGACACGTGCTCAAGTCGATATAGCAGCTGGGAGATTTGAAGATGCTTTGGAAGCAGCTCAGAAAGCAGTTAGTTTGGATCCCAATAATAGGGAGGCCAATATGGTTATGAGAAAGGCTCAGGTTGTCAATGCTGCTCGATCAAAGGGAAACGAGCTTTTCAAGGCATCAAGGTTCTCTGAGGCCTGTGCCGCATATGGAGAGGGACTTGAACGCGATCCATATAACTCTGTTTTATTATGCAACAGTGCTGCATGTAGATTAAAACTAGGCCAACTTGAGAAAGCTGTGGAAGATTGTACTCTTGCACTTAACTTGCGCCCATCTTATGCCAAGGCTAGGTTGAGAAGAGCTGATTGCAATGTCAAGTTGGAAAAGTGGGAAGCTTCCATACAAGACTATGAAATTTTGTTAAAAGAGACACCAGATGATGAACAAGTAAAACGGGCATTGCTGGAGGCCCAAGAAAAGCTGAAGAAGAAAAGAGGTGGATAA 1764 0.428 MRDPSESRGCGMNLISALLGRHGSCPRKIESYSDDDDAHNRGKRRSKTKDSKRSRSDVSINATGSVASATSNYMTSQISQKQKHVFVSVNQIQQRKQQHHHHGEVVAAPMAVCSSAKSSKVSPVEGYVNQGKKVPKDAVGLSGELDSMLNDYHKSKGNSRLVRASSSNVMIHGNLGNLRQGGGGGGEGGGGGGGGTNYPSSNNPMDKVENGGGSNNNRNKKVTSNSKEELDSLCRAVSTRMDPEQLKIMGNEDYKNGNFAEALSLYDAAIAIDPNKAAYRSNRSAALTALGRLLEAVFECREAIQIDQRYQRAHHRLGNLYFRFLAGPEADPDEIAKVKILQVHLNKCTEARRVGDCNTLITETNKVISYGADSAQQIFALQAEALLKLRRHQDAENIMSKCPKFDIDECSKFFGPICNANLLVTRAQVDIAAGRFEDALEAAQKAVSLDPNNREANMVMRKAQVVNAARSKGNELFKASRFSEACAAYGEGLERDPYNSVLLCNSAACRLKLGQLEKAVEDCTLALNLRPSYAKARLRRADCNVKLEKWEASIQDYEILLKETPDDEQVKRALLEAQEKLKKKRGG 587
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181423g00016 587 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 13 586 IPR044534 -
Stsc181423g00016 587 Pfam Tetratricopeptide repeat 421 453 IPR013105 -
Stsc181423g00016 587 ProSiteProfiles TPR repeat profile. 420 453 IPR019734 GO:0005515
Stsc181423g00016 587 SUPERFAMILY TPR-like 243 456 IPR011990 GO:0005515
Stsc181423g00016 587 MobiDBLite consensus disorder prediction 27 44 - -
Stsc181423g00016 587 SUPERFAMILY TPR-like 466 583 IPR011990 GO:0005515
Stsc181423g00016 587 MobiDBLite consensus disorder prediction 24 63 - -
Stsc181423g00016 587 Pfam Tetratricopeptide repeat 250 304 - -
Stsc181423g00016 587 SMART tpr_5 243 276 IPR019734 GO:0005515
Stsc181423g00016 587 SMART tpr_5 534 567 IPR019734 GO:0005515
Stsc181423g00016 587 SMART tpr_5 420 453 IPR019734 GO:0005515
Stsc181423g00016 587 SMART tpr_5 277 310 IPR019734 GO:0005515
Stsc181423g00016 587 SMART tpr_5 466 499 IPR019734 GO:0005515
Stsc181423g00016 587 SMART tpr_5 500 533 IPR019734 GO:0005515
Stsc181423g00016 587 MobiDBLite consensus disorder prediction 177 229 - -
Stsc181423g00016 587 ProSiteProfiles TPR repeat profile. 243 276 IPR019734 GO:0005515
Stsc181423g00016 587 Gene3D Tetratricopeptide repeat domain 241 586 IPR011990 GO:0005515
Stsc181423g00016 587 MobiDBLite consensus disorder prediction 195 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181423g00016 Stsc-Chr181423 74227 77405 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181423g00016 244 318 U-box Gene Family AT3G07370 36.000 2.71e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181423g00016 - - lang:109326248 637.876