Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181423g00001 ATGACCCAGCAGCATGTGGTGGTGTGCAACACAAAATCCAGCGTTGAGTTGTCGGTTTTCCCGGCGGTAACTGCGGCGCAAAAGCCACCGGTGGCCGGCGGAGGGTACATTTCGATTTCAAGGAGGCCAAGGAGAGTTCTAAAGAACCTTGAGATCAATGGGGACCAAAGAATCAACGCATGGGTTGAATCCATGAGAGCCTCTTCACCTACCCATCTCAAGTCCACTACTTCTTCTTTCACCGAAGAACATAGTTCTTGGATTCTTCGGCATCCATCAGCATTGGACATGTTTGAGGAAATTATGGTAAGATCCAAAGGGAAGCAAATTGTGATGTTCCTTGACTATGACGGAACGTTGTCCCCTATAGTTGAGGACCCTGACCGTGCTTTCATGTCAAATTCGATGAGGAAAACCGTTAGAAAACTCGCAAGGTGTTTTCCAACTGCCATAGTGACTGGAAGATGCAAAGAAAAGGTATATAATTTTGTTCGGTTGGCAGAGCTATACTATGCTGGGAGCCACGGTTTGGATATTAAAGGACCAACAACAACCTCCAAATACACCAAAGATAGTAAGGCAGAAGCAGTTCTTTTTCAACCAGCAAGTGAATTTCTTCCCATGATAGATGAGGTGTACCAGCAATTAGTGGATAAGACAAAATCAACTCCTGGAGCTAAAGTGGAGAACAACAAGTTCTGCGTTTCTGTTCATTTTCGTTGTGTTGATGAGAAGAGATGGAGTGAACTTTTACATAAAGTGAAATCAGTGTTAAAAGAGTACCCTAAGCTTCGTCTTACACAAGGAAGGAAGGTACTTGAGATTCGCCCCACAATTAAATGGGACAAAGGCAAAGCCCTAGAATTTTTATTAGAGTCGCTCGGATTTGCCAACTGTAATGACGTATTTCCGGTTTATATTGGTGATGATCGAACTGATGAAGATGCTTTCAAGAAATTAAGAGAGAGGGGTCAAGGTTTAGGGGTTCTTGTGTCAAAATTTCCAAAGGATACGATTGCTTCTTACTCTCTTCAAGACCCTAATGAGGTGATGGAATTTCTTCAACGCTTGGTGGAATGGAAACAAGTATCCATGCAAGCAAGTTCATGA 1110 0.4315 MTQQHVVVCNTKSSVELSVFPAVTAAQKPPVAGGGYISISRRPRRVLKNLEINGDQRINAWVESMRASSPTHLKSTTSSFTEEHSSWILRHPSALDMFEEIMVRSKGKQIVMFLDYDGTLSPIVEDPDRAFMSNSMRKTVRKLARCFPTAIVTGRCKEKVYNFVRLAELYYAGSHGLDIKGPTTTSKYTKDSKAEAVLFQPASEFLPMIDEVYQQLVDKTKSTPGAKVENNKFCVSVHFRCVDEKRWSELLHKVKSVLKEYPKLRLTQGRKVLEIRPTIKWDKGKALEFLLESLGFANCNDVFPVYIGDDRTDEDAFKKLRERGQGLGVLVSKFPKDTIASYSLQDPNEVMEFLQRLVEWKQVSMQASS 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181423g00001 369 CDD HAD_TPP 111 352 - -
Stsc181423g00001 369 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 38 366 IPR044651 GO:0004805|GO:0005992
Stsc181423g00001 369 Gene3D - 215 368 IPR023214 -
Stsc181423g00001 369 Gene3D - 110 202 IPR023214 -
Stsc181423g00001 369 Pfam Trehalose-phosphatase 113 347 IPR003337 GO:0003824|GO:0005992
Stsc181423g00001 369 FunFam Trehalose 6-phosphate phosphatase 110 197 - -
Stsc181423g00001 369 NCBIfam trehalose-phosphatase 108 358 IPR003337 GO:0003824|GO:0005992
Stsc181423g00001 369 FunFam Trehalose 6-phosphate phosphatase 208 367 - -
Stsc181423g00001 369 SUPERFAMILY HAD-like 111 360 IPR036412 -
Stsc181423g00001 369 NCBIfam HAD-IIB family hydrolase 112 322 IPR006379 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181423g00001 Stsc-Chr181423 12179 16977 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181423g00001 112 320 Trehalose Biosynthesis Gene Families AT1G23870 27.650 7.28e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181423g00001 K01087 - gmx:100794430 610.912