Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181422g00004 ATGGCTTGGAAACACAGAAAGCTCTTCCCAACGCAAACAAACCAAACCCAAGATTGTTCTGGATTATGTGACCCTGCATGTCCGTACAACTGTTACACCAACTACCCTGACTACTATCTTTCACCACCACCACCGCCTTCTTCCACCGTTTCTGACCACTCCGGCAACCACATCTCCTCCTACTTAATCATCCTCGTATCGCTGTTCTCCGTCATTTTCCTTCTCATCGGTCTGTACGTCGTCAAGCTTAAATGCTATGCCGCCTGGTGCGGGCGGAGGCAGGACAACCGCTCCGCCCGCACGCAGTCGGACAACGAGTTTGTCAATGAGAATCAAGTTGATCACCCGGTGTGGCTAATCGCCACGGTTGGATTGCAACAGTCAATTATAAATTCTATAACCGCTTGCCGTTACAGGAAGGGCGACGGTTTGATCGAAGGAACGGAGTGTTCCGTTTGCTTGAACGAGTTTCAAGAAGGTGAAACGTTGAGGCTGTTGCCAAAGTGTAGTCACGCTTTTCATATTCCGTGTATTGACACGTGGCTACGCTCTCATACCAATTGTCCTCTTTGCCGCGCTAGTATTGTTAATGTTTCCGGCAATAATGCAATTTCTGACGCAAGGATTTCAAATTCGATTTCACTAGATCAAGAAACCAGTGATGTTGGTGGTGGTGATTTGGGAAGGAATCTGAATCGAGATCGGTCGCGAAACGATAGAGGATTAAGTGGTGATGATAATTTGCTTTCTAATTCGGCCATGGAAAACAGTGCTAGAACTGGGGAGGCCGGTGAACTAGTGGAATTTGAGGGAACATTCAATGATGAATTGAATTCAAAGGAGCGAGCCAATTCCGATACGTGTCATAATGTTTCTTACGAGGTTAATGGGATTCACAATGATAAGATACAAGATGAGATTGTAGCGAGTTCGAATTCCAGAGAACCTGAAACTCACTCCACAGATCATATAGAAGATAGTGAGTAA 987 0.459 MAWKHRKLFPTQTNQTQDCSGLCDPACPYNCYTNYPDYYLSPPPPPSSTVSDHSGNHISSYLIILVSLFSVIFLLIGLYVVKLKCYAAWCGRRQDNRSARTQSDNEFVNENQVDHPVWLIATVGLQQSIINSITACRYRKGDGLIEGTECSVCLNEFQEGETLRLLPKCSHAFHIPCIDTWLRSHTNCPLCRASIVNVSGNNAISDARISNSISLDQETSDVGGGDLGRNLNRDRSRNDRGLSGDDNLLSNSAMENSARTGEAGELVEFEGTFNDELNSKERANSDTCHNVSYEVNGIHNDKIQDEIVASSNSREPETHSTDHIEDSE 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181422g00004 328 MobiDBLite consensus disorder prediction 309 328 - -
Stsc181422g00004 328 MobiDBLite consensus disorder prediction 217 262 - -
Stsc181422g00004 328 MobiDBLite consensus disorder prediction 228 242 - -
Stsc181422g00004 328 FunFam RING-H2 finger protein ATL54 125 198 - -
Stsc181422g00004 328 CDD RING-H2_EL5-like 149 192 - -
Stsc181422g00004 328 ProSiteProfiles Zinc finger RING-type profile. 150 192 IPR001841 -
Stsc181422g00004 328 MobiDBLite consensus disorder prediction 243 258 - -
Stsc181422g00004 328 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 125 200 IPR013083 -
Stsc181422g00004 328 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 50 198 IPR044675 -
Stsc181422g00004 328 SMART ring_2 150 191 IPR001841 -
Stsc181422g00004 328 SUPERFAMILY RING/U-box 144 199 - -
Stsc181422g00004 328 Pfam Ring finger domain 149 192 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181422g00004 Stsc-Chr181422 31432 34610 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181422g00004 4 199 C3H Transcription Factor Family AT1G72220 50.446 2.92e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181422g00004 - - aprc:113847030 343.969