Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181421g00013 ATGATTGGTGGTGGATCAACTCGCTTGTCTTGTTCTTCTTCTTCCTTCACCTATGGATGGACCTATGATGTCTTCATCAGCTTCAGGGGCACCGATACTCGCCATGGCTTCACCGGTCATCTCTACAGTGCACTCTCTCACAGGGGAATCCGCACCTTCATTGACGATCAGGACCTTCAAAGAGGCCACGAGATCACACCTTCTCTTCTCAACGCAATCCAAGAATCCAGGATTGCTATCATTGTCTTCTCTCCAAACTATGCATCTTCCTCTTTTTGCTTGGATGAACTTGCCACCATCATGGACTCTCTCAACTCCAAAGCTAGGTTGGTTTTGCCTGTTTTCTATGGCGTGGATCCAAGTGATGTGAGGCATCAGAGAGGGACTTATGCTGAAGCTCTCGCCAGACATGAGGAAAGGTTCAAGGATAATTTGGACATTGTGCTTAATTGGAGGAATGCTCTTCATCAAGCAGCTAACTTGTCCGGATGGCACTTCAAACAAGGGGATGGATATGAGTACAAGTTTATCGGAGAGATTGTGGAAGCTGTCTCGAGAAATGTTAGACGAGGTGTTTTGCCTGTTGCTGATTACCCGGTTGGACTCGAGTCCAAGGTGGTACAAGTAAATTCCCTTCTGGAGTTTGGGTGTAATGATGGAGTCCTTATGGTTGGGATCCATGGAATTGGTGGAATTGGTAAAACCACACTTGCTCTAGCTGTATATAACTGCATTGCTGACCATTTTGAAGGCTTGTGTTTTCTTGAAAGTGTGAGAGAAAATTCAAGTAAACATGGACTGGTACATCTTCAGAATATCCTTCTTTCAGAATTATTAGGTGAGAATAAATTTCATGCAACCAGTGTACAACAAGGAATTTCAATAATACAGCATAGGCTCCAGAGTAAGAAGATTCTTCTGATTTTAGATGATGTCGACAAACAGGAGCAATTGCAAGCTATTGCTGGAAATCCTGTCTGGTTTGGTCCTGGCAGCAGAGTCATCATTACGACGCGAGACACACATTTGCTGGCATGTCATGGGGTTGAAAGATCATACGAGTTGGAGGGTTTAAATTATGCAGATGCTGCTGAATTGCTTAGTTGGAAGGCTTTTAAATCTGTTAATGTCAGTCCAAGTTACGCCGATGTTTTGAACCGTGCAGTAACTTATGCTCATGGACTTCCATTGGCTTTGGAAGTAATAGGTTCCAACATGTTTGGAAAAAGTATCGGGGAATGGAAATCTGCAATAAATCAATATGAAAGAATTCCTAATAATAAGATCCATGAGATACTTAAAGTAAGTTTCGATGCTTTAGAGGAAGAAGAGCAAAGTGTTTTTCTTGATATTGCTTGCTGCTTCAGGGGATATCCATTAGCAGAAGTTGAAGATATACTTCATGCTCATCATGGTGCCTGTATGAAATATCACATTGGTGTTTTGGTTGACAAATCTATCATAAAGATTGGATGGCGTGGTACGATCACATTACATGACCTGATAGAGCACATGGGTAAAGAACTTGTCCGACAGGAGTCACCAAAAGTGATTGGGAAACGTAGCAGGTTATGGTGGCATGAAGATATAGTTCAAGTTTTGGAAGACAATCAAGGAACTAGTGAAATAGAAATCATTCATCTGAATTTCCCCTCATCTGAGGATGAAGAAGAAGCAAAAGTAGAATGGGATGGGAAGGCCTTCAAGAAGATGAAAAATCTCAAAACGCTCATTATAAAAAATGGCCATTTTTCTGAAGGTCCCAGACATTTTCCAAATAGTTTAAGAGTTCTAGAATGGTGGGGATATCCTTCTGAATGCTTACCATCTAGTTTTCATCCAAAGAAACTTTCCATATTCAAGTTACCGTATAATGGCTTCTTATCACCCTATTTGGCTAGCTTATTGAAGGCAAGGAAGTTTGCAACCATAAAAGTTTTGAATTTCGACTACAATAAATATTTAACACAGCTACCAGATGTATCTGGTCTTCCGAATTTACAAAAGTTGTCATTTGAGTACTGTGAGAATTTAATTTCAGTCCACAATTCAGTTGGTCTCCTTGAGAAACTTAAAAGTTTGAGTGCTTATTCTTGCCGTAAGCTTACAAGTTTTCCGTGCATCAACTTGCCTTCTCTTGAAGAACTCATACTTTCAGGATGCTCAAGTCTTGAGAATTTTCCCGAAATACTAGAAAAGATGGAAAATGTAACACAACTTCAATTGGAGCAAACTGGAATAAAAGCTTTGCCATCTTCTTTTCAGAAGTTTTCTCGGCTGCAGCGGTTGACTTTGATTGAAAATAAATATTGTAAGATACCAAATGCCATTGTCATGATGCCTGAACTGATCAGGATTGTAGTTACACCACGCGAGAAGGATCGGCTATCAATAAAACAAGACGAGGGTGAAGAAACAGTGAGCTCAATGATGTCTTCAAATGTAGAATGTCTAAATATCTCGCGCTGCAAGCTGTCAGATGATTTTTTCCCTCTAGGTCTTGCATGGTTTGCTAATGTGAAAGAATTAGACCTAGGATGCAATGATTTCACAATTCTTCCTGAATGCATCAAAGAATGTCACTTTCTGAGCAAGCTTATTGTGGACTATTGCCCAAATCTTCAGGAAATTAGAGGGATTCCACCAAATTTGAAACACTTCTCAGCAATAGGCTGCAAATCCTGGACTTCTTCATGCACGAGCATGTTACTGAATCAGGAACTGCATGAGGCTGGGAACACCAGGTTTGCTTTGCCTGGGTCACAAATTCCAGAATGGTTTGAGCACCACAGCAAGGGAGCATCAGTTTCTTTCTGGTTTCGTAATAAGTTCCCTGCCATAGCTCTCTCTCTTGCAATTGAACTGAAGGATAAGGACACAGTTTTTGTAAGCCCCAACGTGACCATCAATGGCAAGAAAGGTTTTCCTGACTTCTGGACTGAAATGGAACAGATATTCCTCCTTGATCTACAGATGATAGAATGCGACTTGGGTGAGACACTTACAGAAAATGAATGGAATCATGCAGAGATTTCGTGCACGGCTAGTGATCATTTTCTTTTTATCAGAGAAAAGTTCCCAGTTGAGCCTTTTGCAAAAGAAATCGGAATCCATGTATTCAGGGAAAAAAGTACCATGGAGGATGTTCGATTCACCTATCCTTATAAAAGAAGAAAATTAGATGAAGGTCTCTGTAGTTTAGATCCATGA 3210 0.4062 MIGGGSTRLSCSSSSFTYGWTYDVFISFRGTDTRHGFTGHLYSALSHRGIRTFIDDQDLQRGHEITPSLLNAIQESRIAIIVFSPNYASSSFCLDELATIMDSLNSKARLVLPVFYGVDPSDVRHQRGTYAEALARHEERFKDNLDIVLNWRNALHQAANLSGWHFKQGDGYEYKFIGEIVEAVSRNVRRGVLPVADYPVGLESKVVQVNSLLEFGCNDGVLMVGIHGIGGIGKTTLALAVYNCIADHFEGLCFLESVRENSSKHGLVHLQNILLSELLGENKFHATSVQQGISIIQHRLQSKKILLILDDVDKQEQLQAIAGNPVWFGPGSRVIITTRDTHLLACHGVERSYELEGLNYADAAELLSWKAFKSVNVSPSYADVLNRAVTYAHGLPLALEVIGSNMFGKSIGEWKSAINQYERIPNNKIHEILKVSFDALEEEEQSVFLDIACCFRGYPLAEVEDILHAHHGACMKYHIGVLVDKSIIKIGWRGTITLHDLIEHMGKELVRQESPKVIGKRSRLWWHEDIVQVLEDNQGTSEIEIIHLNFPSSEDEEEAKVEWDGKAFKKMKNLKTLIIKNGHFSEGPRHFPNSLRVLEWWGYPSECLPSSFHPKKLSIFKLPYNGFLSPYLASLLKARKFATIKVLNFDYNKYLTQLPDVSGLPNLQKLSFEYCENLISVHNSVGLLEKLKSLSAYSCRKLTSFPCINLPSLEELILSGCSSLENFPEILEKMENVTQLQLEQTGIKALPSSFQKFSRLQRLTLIENKYCKIPNAIVMMPELIRIVVTPREKDRLSIKQDEGEETVSSMMSSNVECLNISRCKLSDDFFPLGLAWFANVKELDLGCNDFTILPECIKECHFLSKLIVDYCPNLQEIRGIPPNLKHFSAIGCKSWTSSCTSMLLNQELHEAGNTRFALPGSQIPEWFEHHSKGASVSFWFRNKFPAIALSLAIELKDKDTVFVSPNVTINGKKGFPDFWTEMEQIFLLDLQMIECDLGETLTENEWNHAEISCTASDHFLFIREKFPVEPFAKEIGIHVFREKSTMEDVRFTYPYKRRKLDEGLCSLDP 1069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181421g00013 1069 Gene3D Ribonuclease Inhibitor 547 908 IPR032675 -
Stsc181421g00013 1069 Pfam NB-ARC domain 208 430 IPR002182 GO:0043531
Stsc181421g00013 1069 PRINTS Disease resistance protein signature 708 724 - -
Stsc181421g00013 1069 PRINTS Disease resistance protein signature 223 238 - -
Stsc181421g00013 1069 PRINTS Disease resistance protein signature 299 313 - -
Stsc181421g00013 1069 PRINTS Disease resistance protein signature 392 406 - -
Stsc181421g00013 1069 Gene3D - 17 185 IPR035897 -
Stsc181421g00013 1069 ProSiteProfiles TIR domain profile. 20 188 IPR000157 GO:0007165
Stsc181421g00013 1069 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 164 IPR035897 -
Stsc181421g00013 1069 SUPERFAMILY L domain-like 515 908 - -
Stsc181421g00013 1069 Gene3D - 357 441 IPR042197 -
Stsc181421g00013 1069 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 22 875 IPR044974 GO:0006952
Stsc181421g00013 1069 Gene3D - 186 350 IPR027417 -
Stsc181421g00013 1069 Pfam TIR domain 22 187 IPR000157 GO:0007165
Stsc181421g00013 1069 SMART till_3 21 161 IPR000157 GO:0007165
Stsc181421g00013 1069 FunFam Disease resistance protein (TIR-NBS-LRR class) 18 190 - -
Stsc181421g00013 1069 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 451 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181421g00013 Stsc-Chr181421 52246 55939 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181421g00013 16 867 WRKY Transcription Factor Family AT4G12020 29.304 3.11e-75 271
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181421g00013 - - gmx:100780257 1262.28