LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Stsc181421g00012	ATGGCTCTGCAATCCACCTCCTCCTCAGCCCATCCTTTTTCCTCTTCTTCCATCAGATATGAATGGAAATATGATGTGTTCATTAGCTTCAGAGGCCATGATACTCGCTATGGTTTCACTGGCAACCTCTACAATACACTCCTTAAGAAAGGAATCCACACTTTCTTTGATGCTGAGGAACTTCAAAGTGGAGAGGAAATCACACCTGCACTGCTCAATGCAATTCAAAACTCCAGGATTGCCATCATTGTGCTCTCTTCTAAATATGCACATTCTTCTTTTTGCTTGGAGGAACTAGTCCATATCCTTGACTGCATCAAGGGAAACGGTCGCTTGGTCTTACCTATTTTCTATGAGGTGGATCCTTCTGATGTGCGCTGTCTAAAAGAGGGTTTTGGAGAGGCAATGGCTAAGCATGAGAAAAGATACAACAAGGTGGACAAATGGAAGAAGGCTCTCCATCAAGTAGCTAATTTGTCTGGTTATCATTTCAAACACGGGGATGGATATCAACATAAGTTTATTGAAAATATTGTGGAAGACATTTCAAGAAAGATAAGCCATGTACCTTTGCCAGTGGCTGACTTCCCTGTTGGACTTGAGTCTCGTGTGCCACAAGTAATTTCGCTTTTGGAAATGGAGTCTACTGATGGAGTTCACATGGTAGGGATACATGGAATCGGTGGCATAGGTAAAACTACACTTGCTCTTGCAATTTATAACGTGGTTGCTAACAATTTTGAAGGTGTGTGCTTTCTTGAGAGCGTGAGAGAAAAGTCACAAAAACATGGGTTGATGCATCTTCAAAAGGATCTTCTTTGTAAGATATTAGGGAAAGAGGGAGTCCACATAATAGGTGTTAATGAGGGAACTTCACAGATACAATGTAGACTCGGCCAAATGAAGGTTCTTTTGGTTCTGGATGACGTTGATGATTCCAAGCAGCTACAGGCTATTGCTGAAGAAACTGATTGGTTTGGTGGTGGTAGCGGAGTCATAATTACAACACGAGACACACATTTGCTAAAACTGCATGGTGTTGAAAGGACATATTACGTCCAAGGTTTAGATAGGGAAGATTCCTTTAAGTTGCTTATTTGGAAAGCTTTTAAAACTAAAACTGTTTGCCCAAGTTATGCAGATGTTATAAATCGTGCAATAACTTATGCCTCTGGACATCCACTTGCTTTGGAATTAATAGGCTCCAACTTGTTTGGAAAAGAAGTACAAGTTTGGGAATCCGCATTGGATCAATTTGAAAAACATCTTGATGATAAAATACATAAGATACTTCGAGTAAGTTTTGATGCTTTGGGAAGACAAGAGCAAAGTGTTTTTCTTGATATTGCCTGTTGTTTCAAAGGACATAGTTTAGAGAAAATCACTGATCTACTTCAAGCTCATTATGGGCGTTCCATGAAATATCATATTGAAGTGTTGCTTGAAAAATCTCTCATAAAGACAATTCAGTATGATAAGGTGACAATGCATGACTTGATAGAGGACATGGGCAAAGAAATTGACAACCTAGAAAAATCAGCAGAAATGCCCGGAAAGCTTAGAAGATTATGGTTCTATAAAGACATAGTTAAAGTTTTAGAAGACAATCAAGGGTCTAGCACCATTGAAATCATTTATTTGGAATTTCCTTCATTTAAAGATGCAGAAGTGAAATGGGATGGAACGGCTTTTAAAGAGATGAAAAATCTCAAAACACTAATCATAAAAAATGGTTGTTTTTCTAAAAGTCCGAAACATCTTCCAAACAGTTTAAGAGTATTGGAATGGCGGAAATATCCTTCAGAGTATTTTCCACCTGATTTTCAACCAGAGATGCTTTGCATACTCAAGCTACCTGATTATGTCTACCCATTACCCAAGTTGGATAGCTTATCCAAGGCAAGTAAATTGGTGAGCTTGAAAGAAATACCTGATCTGTCTGGTCTTCATAGTTTACAAGAATTATCTTTGGAAGGATGTAGAAATTTAGTTACAGTTGACAATTCAGTTGGTTTTCTACCTAAACTTCAAATATTGAATGCTTATGGTTGCGAAGAACTGAGTTATTTTCCACCTGTTATCCAGTTGCCCTCACTGGAGGATCTTTATCTATCTGGTTGCTCAAGCCTTGAGTATTTTCCAGAAATTCAACAAGAGATGGAAAATGTTAAATCACTTCATTTGAGTAACACTGGCATAAAAGATTTGCCATTTTCATTTCGTAATCTTTCTAGGTTGAAGAGTTTGTATTTAGGTGGAGAAGAAATGTGTAAGATGCCAAGTGTGATTGGCATGATGCCACAACTATCTTACTGTCATGTTGAGGGAGGAGACAATGAGGGAAGGGTATCCGGAAAGCTGGAGGAAGGGTTTCAAGGAATGTTCACTCACTCAGTTCCCTCTCAAAATCTTACTTCTCTTTTTCTAGAAAACACCAATTTGTCAAATGACTTTTTTCCGTTAGCTGTTGCATGGTTTCCCAATGTGGAAAGGTTAGACCTGAGAGGCAATAATTTCACAATACTTCCTGAATGCATCCAACAATTTTGCTTTCTAAAAGACCTCAGACTGAAAGATTGTCCGCATCTTCGGGATATTAGAGGGCTTCCACCAAACTTGGAATACTTGTCAATAGTAAACTGCAAATCTTTGAGTCCCAGGGCTAAACGCGTGTTACTCAATCAGACCGTAGATGACATCATAATTCATGTTAAACCACCTGGTGAGAAAAGATGGAATCATGCACTACCACATTGTGAACAAGGATGGAATCATGTGGAGGTTACATATGAAGGACTTGACGCTTGGTGCGAGACGATCCGAAGCGAGTTCATTGTAAAAGAGATTGGGATGCACGTAGTGAATGAAAAGGATACTAGTATAGTTGAAGATATTCGATTCACTGATCCTTACAAAATGACAGAATTAATTGTAATGATGATGATGGTGTCATTAGTATTCCCCAACCATAAGAAGCACCCCTTGCTTCTCGTTAAGGTTTGTGGACATTGCTCTGTCTAA	3021	0.3883	MALQSTSSSAHPFSSSSIRYEWKYDVFISFRGHDTRYGFTGNLYNTLLKKGIHTFFDAEELQSGEEITPALLNAIQNSRIAIIVLSSKYAHSSFCLEELVHILDCIKGNGRLVLPIFYEVDPSDVRCLKEGFGEAMAKHEKRYNKVDKWKKALHQVANLSGYHFKHGDGYQHKFIENIVEDISRKISHVPLPVADFPVGLESRVPQVISLLEMESTDGVHMVGIHGIGGIGKTTLALAIYNVVANNFEGVCFLESVREKSQKHGLMHLQKDLLCKILGKEGVHIIGVNEGTSQIQCRLGQMKVLLVLDDVDDSKQLQAIAEETDWFGGGSGVIITTRDTHLLKLHGVERTYYVQGLDREDSFKLLIWKAFKTKTVCPSYADVINRAITYASGHPLALELIGSNLFGKEVQVWESALDQFEKHLDDKIHKILRVSFDALGRQEQSVFLDIACCFKGHSLEKITDLLQAHYGRSMKYHIEVLLEKSLIKTIQYDKVTMHDLIEDMGKEIDNLEKSAEMPGKLRRLWFYKDIVKVLEDNQGSSTIEIIYLEFPSFKDAEVKWDGTAFKEMKNLKTLIIKNGCFSKSPKHLPNSLRVLEWRKYPSEYFPPDFQPEMLCILKLPDYVYPLPKLDSLSKASKLVSLKEIPDLSGLHSLQELSLEGCRNLVTVDNSVGFLPKLQILNAYGCEELSYFPPVIQLPSLEDLYLSGCSSLEYFPEIQQEMENVKSLHLSNTGIKDLPFSFRNLSRLKSLYLGGEEMCKMPSVIGMMPQLSYCHVEGGDNEGRVSGKLEEGFQGMFTHSVPSQNLTSLFLENTNLSNDFFPLAVAWFPNVERLDLRGNNFTILPECIQQFCFLKDLRLKDCPHLRDIRGLPPNLEYLSIVNCKSLSPRAKRVLLNQTVDDIIIHVKPPGEKRWNHALPHCEQGWNHVEVTYEGLDAWCETIRSEFIVKEIGMHVVNEKDTSIVEDIRFTDPYKMTELIVMMMMVSLVFPNHKKHPLLLVKVCGHCSV	1006

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Stsc181421g00012	1006	Gene3D	-	20	183	IPR035897	-
	Stsc181421g00012	1006	Gene3D	Ribonuclease Inhibitor	715	889	IPR032675	-
	Stsc181421g00012	1006	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	449	IPR027417	-
	Stsc181421g00012	1006	ProSiteProfiles	TIR domain profile.	22	186	IPR000157	GO:0007165
	Stsc181421g00012	1006	Pfam	NB-ARC domain	203	433	IPR002182	GO:0043531
	Stsc181421g00012	1006	SUPERFAMILY	L domain-like	560	885	-	-
	Stsc181421g00012	1006	Gene3D	Ribonuclease Inhibitor	481	714	IPR032675	-
	Stsc181421g00012	1006	SMART	till_3	23	159	IPR000157	GO:0007165
	Stsc181421g00012	1006	Pfam	TIR domain	23	187	IPR000157	GO:0007165
	Stsc181421g00012	1006	SUPERFAMILY	Toll/Interleukin receptor TIR domain	14	162	IPR035897	-
	Stsc181421g00012	1006	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	24	757	IPR044974	GO:0006952
	Stsc181421g00012	1006	PRINTS	Disease resistance protein signature	390	404	-	-
	Stsc181421g00012	1006	PRINTS	Disease resistance protein signature	297	311	-	-
	Stsc181421g00012	1006	PRINTS	Disease resistance protein signature	221	236	-	-
	Stsc181421g00012	1006	PRINTS	Disease resistance protein signature	694	710	-	-
	Stsc181421g00012	1006	Gene3D	-	184	348	IPR027417	-
	Stsc181421g00012	1006	SUPERFAMILY	"Winged helix" DNA-binding domain	425	534	IPR036390	-
	Stsc181421g00012	1006	Gene3D	-	355	439	IPR042197	-
	Stsc181421g00012	1006	FunFam	Disease resistance protein (TIR-NBS-LRR class)	20	188	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Stsc181421g00012	Stsc-Chr181421	44128	47451	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Stsc181421g00012	13	776	WRKY Transcription Factor Family	AT4G12020	29.836	1.13e-73	265

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Stsc181421g00012	-		-	ahf:112751484	1162.9