Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181421g00010 ATGGCTCTTCAATCTTCCATCTCCTCCTCCTCTTCTTCTTCTTCTTCCTTCAGCTATGCATGGGAATATGATGTGTTTATTAGTTTCAGAGGTGAAGATACTCGCTACGGTTTCACTGGCAATCTCTACAAAGCTCTTTCTGACAAAGGAATCCACACCTTCATTGATGATGAGGACCTTCCAAGAGGAGACCAGATCACACCCTCACTTTTCACTGCAATTCAACAGTCAAGGACTGCCATCATTGTCCTCTCTCCTAACTATGCTTCTTCTTCTTTTTGCTTAGACGAGCTTGTTGAGATCCTTCACTGCATCAAGGGAAATCATCGGTTGGTTTTGCCGGTTTTCTATGAGGCTGATCCTTCTGATGTTCGCCATCAAAGAAATAGTTTTGGAGAAGCCATGGCTATGCATGAGGAGAGATTCAAGAATGATTTGAACAAGGTTCACAAATGGAAGCAGGCTCTTAATCAAGTAGCTAATTTGTCAGGCTATCATTTCAAACAAGGGGATGGATATGAACATAAGTTTATTAGAAACATTGTGGAAGTCATTTCGAGAAAGATTAGGCGTGTACCTTTGTTTGTTGCTCGTTTCCCTGTTGGACTAGACTCACTAGATTCTCGAGTGTCAGAAGTGATTTCACTTCTAAAAATGGATTCTAGTGATGAAGTTCACATGGTAGGGATACATGGAGTTGGTGGAATAGGAAAAACAACTCTTGCTTGTGCTGTTTATAACTTGATTGCTGACCATTTCGACGGAAAGGAGGAGGTTAAGATAGCGAGTCTTCAACAAGGAGCTTCTCAAATCCAACGAAGACTATGTCAAAAGAAAGTTCTTTTGATTTTAGACGATGTTGATGATCACAAGCAACTACATGCTATTGCTGGAAAACCTGACTGGTTTGGACCTGGAAGCAGAATTATTATTACAAAAAGAGACACACATTTGCTAAAATGTCATGGTGTTGAAAACATGCATGAGGTAAAGGGTTTAAATGAGGAAGAGTCTTTTCAGTTGCTTATTAAACATGCTTTCAAGAATGGTTATGTTAGCAGCCCAGGTTACATGGATGTTTTGACTCGTACAGTAACTTATGCTTCTGGTCTTCCATTGGCTTTGGAAGTAATAGGTTGTCACTTGTGTGGAAAAAATGTAGAAGAATGGGAATCTGCATTGAATAAATTTGAAAGACATCTTGATGATAAAATACACGAGATACTTCGAGTAAGTTTTGATGCTTTGGAAAAAGAAGAGCAGAGTGTTTTCCTTGATATTGCTTGTTGGTTTAAAGGTTATACGTTAGTGGAAGTTACTGATATACTTCAAGCTCATTATGGGAGTTGCATGAAGGATCATATTGGAGTGTTGCTTGAAAAATCTCTCATAAGGATCAGTTTGTATGATTTAAGAGTGACAATGCATAATTTGATAGAGGACATGGGCAAAGAAATTGATGATCCAGAAAAATCACCGGAAATGCTTGGAAGACGTACTAGATTATGGTTCTATAAAGATATAGTTAAAGTTTTAGAAGATAATCAAGGGACTAGTGCTATTGAAATCATGTATCTGGAGTTTCCCTTATTTGAACAGAAAAGAGATGAAGATTCATTGAAGAAAAAGAGAAATAAAGATGTAGAAGTGAAATGGGATGGAAAGGCTTTTGAAGATATGCAAAATCTTAAAACGCTTATTATAAAAAAATGGCCACAGGAACTTTCCATACTCAAGTTACCCAATAATATCCACTTGTCACCCAAGTTGGATAGCTTATCCAAGAAGTTGGTGACTTTGAAAGTTTTGAATTTTGATTACAATGATTCTCTGAAAGAAATAGCTGATGTGTCTGGTCTTCAAACTTTAGAGGAATTTTTGTTCCGAGGATGTAAAAATTTAGTTACAGTTCACAGTTCAGTTAGTTTTCTACCTAAACTTAAGAGATTGAATGCTGAACATTGCAACAAGCTCAGGACTTTTCCACCTGCTATCAAATTGCCCTTACTGAAAGATTTCAGTCTATCAGATTGCTCAAGCCTTGAGTATTTTCCAGAAATTCTAGAAGAGATGGCAAATGTAAGATGGCTTGACTTGAAAGGCACTGGCATAAAGGAGTTACCATGTTCGTTTCGCAATCTTTCTGGGTTGCGGAATCTGGAAATCATTTGGAATGAAATGTGTAAGATACCAAGTGTCATTTTTATGATGCCGCAACTATCTTCTTGTTATATTGAGGGAGGAGGCAATAAGGGAAGAGTATCAGGAATGCAGGAAGAGGTGCTTCAGGTTCAAGGCATACTCACTCACTCCCCTCTGAAAATGTGA 2328 0.3797 MALQSSISSSSSSSSSFSYAWEYDVFISFRGEDTRYGFTGNLYKALSDKGIHTFIDDEDLPRGDQITPSLFTAIQQSRTAIIVLSPNYASSSFCLDELVEILHCIKGNHRLVLPVFYEADPSDVRHQRNSFGEAMAMHEERFKNDLNKVHKWKQALNQVANLSGYHFKQGDGYEHKFIRNIVEVISRKIRRVPLFVARFPVGLDSLDSRVSEVISLLKMDSSDEVHMVGIHGVGGIGKTTLACAVYNLIADHFDGKEEVKIASLQQGASQIQRRLCQKKVLLILDDVDDHKQLHAIAGKPDWFGPGSRIIITKRDTHLLKCHGVENMHEVKGLNEEESFQLLIKHAFKNGYVSSPGYMDVLTRTVTYASGLPLALEVIGCHLCGKNVEEWESALNKFERHLDDKIHEILRVSFDALEKEEQSVFLDIACWFKGYTLVEVTDILQAHYGSCMKDHIGVLLEKSLIRISLYDLRVTMHNLIEDMGKEIDDPEKSPEMLGRRTRLWFYKDIVKVLEDNQGTSAIEIMYLEFPLFEQKRDEDSLKKKRNKDVEVKWDGKAFEDMQNLKTLIIKKWPQELSILKLPNNIHLSPKLDSLSKKLVTLKVLNFDYNDSLKEIADVSGLQTLEEFLFRGCKNLVTVHSSVSFLPKLKRLNAEHCNKLRTFPPAIKLPLLKDFSLSDCSSLEYFPEILEEMANVRWLDLKGTGIKELPCSFRNLSGLRNLEIIWNEMCKIPSVIFMMPQLSSCYIEGGGNKGRVSGMQEEVLQVQGILTHSPLKM 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181421g00010 775 Pfam NB-ARC domain 266 407 IPR002182 GO:0043531
Stsc181421g00010 775 Pfam NB-ARC domain 210 258 IPR002182 GO:0043531
Stsc181421g00010 775 FunFam Disease resistance protein (TIR-NBS-LRR class) 19 191 - -
Stsc181421g00010 775 Gene3D - 17 195 IPR035897 -
Stsc181421g00010 775 Pfam TIR domain 23 188 IPR000157 GO:0007165
Stsc181421g00010 775 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 165 IPR035897 -
Stsc181421g00010 775 Coils Coil 387 407 - -
Stsc181421g00010 775 Gene3D - 196 258 IPR027417 -
Stsc181421g00010 775 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 703 IPR044974 GO:0006952
Stsc181421g00010 775 Gene3D - 332 417 IPR042197 -
Stsc181421g00010 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 200 427 IPR027417 -
Stsc181421g00010 775 SUPERFAMILY L domain-like 475 747 - -
Stsc181421g00010 775 Gene3D Ribonuclease Inhibitor 543 766 IPR032675 -
Stsc181421g00010 775 ProSiteProfiles TIR domain profile. 21 185 IPR000157 GO:0007165
Stsc181421g00010 775 SMART till_3 22 162 IPR000157 GO:0007165
Stsc181421g00010 775 PRINTS Disease resistance protein signature 665 681 - -
Stsc181421g00010 775 PRINTS Disease resistance protein signature 368 382 - -
Stsc181421g00010 775 PRINTS Disease resistance protein signature 227 242 - -
Stsc181421g00010 775 Gene3D - 259 329 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181421g00010 Stsc-Chr181421 39123 41905 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181421g00010 17 747 WRKY Transcription Factor Family AT4G12020 28.121 3.92e-56 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181421g00010 - - aip:107644584 1189.87