Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181421g00009 ATGCCTCTGCAATCCTCCTCCTCCTCAGCCCATCCATTTTCATCTTCTTCCATCAGATATGAATGGAAATATGATGTGTTTATTAGCTTCAGAGGTTTAGATACTCGCTACGGTTTCACCGGCAATCTCTACAGTGCACTCTGTAAGAAAGGAATCCACACTTTCTTTGATGATGACAAGCTTCAAAGTGGAGAGGAAATCACACCTTCACTGCTCAAGGCAATTGAAAACTCCAGGATTGCCATCATTGTGCTTTCTCCTAGCTATGCTCATTCTTCATTTTGCTTGGAGGAACTCCTCCATATCCTTCATTGCATAAAGGGAAACAGTCGCTTGGTTTTGCCAATTTTCTATGAGTTTATTGACAAGATTGTGGAAGACATTTCAAGAAAGATAAGGCGTGTACCTTTGCCAGTGGCTGACTACCCTGTTGGACTTGAGTCTCGTGTGCCACAAGTAATTTCACTTTTGGAGATGGGCTCTACTGATCAAGTTCACATGGTAGGGATACATGGAATCGGTGGCATAGGTAAAACTACACTTGCTCTTGCAATTTATAACTTCATTGCTGACCATTTTGATGGTGTGTGCTTTCTTGAAAACGTGAGAGAAAATTCACAAAAACATGGGTTGGAGAGTCTTCAAAAAGATCTTCTTTGTAAGATATTAGGGAAGGAGGGAGTCCACATAATAGGTGTTAAGGATGGAACTTCACAGATACAACGCAGACTCAACCAAATGAAAGTTCTTTTGGTTCTGGATGACGTTGATGATTCCAAGCAGCTACAGGCTATTGCTGGAGAACCTGATTGGTTTGGTGGTGGTAGCAGAGTCATTATTACAACATGGGACACACATTTGCTAAAACTCCATGGTGTTGAAAGGACATATTATGTTGAAGATGTTTTAAATCGTGCAATAACTTATGCCTCTGGACATCCACTGGCTTTGGAATTAATTGGTTCCAACCTGTTTGGTAAAGAAGTACAAGTTTGGGAATCTGCATTGGACCAATTTGAAAAACATCTTGATCATAAAATACGTAAGATACTTCGAGTAAGTTTTGATGCTTTGGAGGAACAAGAGCAAAGTGTTTTTCTTGATATTGCCTGTTGTTTCAAAGAATATACATCAAAGGAAATTAGTGATCTACTTCAAGCTCATTATGGATATTCCATGAAATATCATAGTAGAGTGTTGGTTCAAAAATCTCTCATAAAGATTGGTGATTTTGATAAGGTGACAATGCATGACTTGATAGAGGACATGGGCAAAGAAATTGATGATCTAGAAAAATCAGCAAATATGCCTGGAAAGCGTAGAAGATTATGGTTCTATAAAGACGTAGTTAAAGTTTTAGAAGACAATCAAAAATTGGTGAGCTTGAAAGTTTTGAAATTTGATGGCAGTGATCGTTTGAAAGAAATACCTGATGTGTCTACTCTTCAAACTTTGCAACAACTATCTTTGGAAGGATGTAGGAATTTAGTTACAATTCACAATTCAGTTGGTTTTCTACCTGAACTTAAAATATTGAATGCTGATTATTGCGACAAACTGAGGAATTTCCCACCTTTTATCGAATTGCCCTCACTGGAAATACTCATGCTAGATGGTTGCTCAAGCCTTGAGTATTTTCCAGAAATTCAACAAGAGATGGAAAATGTTAAATCACTTGTTTTGAGAAACACTGGCATAAAAGATTTGCCATGTTCATTTCGTAATCTTTCTAGATTGTCTTTTTTGCAATTAAGTGGAGATGAAATGTGTGAGATTCCAAATGTGATTGGCATGATGCCACAACTGTGTTACTGTGATATTGAGGGAGGAGGCAATAAGGGAATGATATCAGGAAAGCTAAAGGAAGGGTTGCAAGGAATACTCACTCACTCACTCCCCTCTGCAAATCTAACTTCTCTTTCTCTTGAAAACACCAGTTTGTCAGATGAGTTTTTCCCCCTAGCTGTTGCATGGTTTCCCAATGTGGAACAGTTAATCCTAAGAGGCAATAATTTCACAGTTCTTCCTGCATGCATCCAACAATTTCACTTTCTAAGATCCCTGGTAGTGAATGATTGCCCGCATCTTCGGGAGATTAGAGGACTTCCACCAAATTTGGAATACTTCTCAGCAGTAAAATGCAAATCCTTGAGTCCCAGGGGAACAAGCTTGTTACTCAATCAGGGATTGTACCTGGGTAGATCGGCTGACTTTGTGATGCCAGGTGGAAGGATTCCAAGGTGGTTTGAGCAGCGCCGCCGTGGCGAAACTAGTATATCTTTCTGGTTTAGTGGCACCAAATTCCCTGCCGAATCTCTTTGCTTAGCAATTCTACTCAAAGATCACATCCCTTCCCTTAGCTTAGTAAACATCTTCTTCCGAATCAATGGCAAACAAGTTTCTGATAAATGTAGCATAATGGAGCAATTACTCATTTTTAATATGAATTCATTAAGTTATCTTGAAGGACCACCTGGTGATAAAGGATGGAATCATGCACTACCACATTGTGAAAATGGATGGAATCATGCGGAGGTTTCATATGAAGGAGTGACAGATCCTACATTGTGA 2571 0.3921 MPLQSSSSSAHPFSSSSIRYEWKYDVFISFRGLDTRYGFTGNLYSALCKKGIHTFFDDDKLQSGEEITPSLLKAIENSRIAIIVLSPSYAHSSFCLEELLHILHCIKGNSRLVLPIFYEFIDKIVEDISRKIRRVPLPVADYPVGLESRVPQVISLLEMGSTDQVHMVGIHGIGGIGKTTLALAIYNFIADHFDGVCFLENVRENSQKHGLESLQKDLLCKILGKEGVHIIGVKDGTSQIQRRLNQMKVLLVLDDVDDSKQLQAIAGEPDWFGGGSRVIITTWDTHLLKLHGVERTYYVEDVLNRAITYASGHPLALELIGSNLFGKEVQVWESALDQFEKHLDHKIRKILRVSFDALEEQEQSVFLDIACCFKEYTSKEISDLLQAHYGYSMKYHSRVLVQKSLIKIGDFDKVTMHDLIEDMGKEIDDLEKSANMPGKRRRLWFYKDVVKVLEDNQKLVSLKVLKFDGSDRLKEIPDVSTLQTLQQLSLEGCRNLVTIHNSVGFLPELKILNADYCDKLRNFPPFIELPSLEILMLDGCSSLEYFPEIQQEMENVKSLVLRNTGIKDLPCSFRNLSRLSFLQLSGDEMCEIPNVIGMMPQLCYCDIEGGGNKGMISGKLKEGLQGILTHSLPSANLTSLSLENTSLSDEFFPLAVAWFPNVEQLILRGNNFTVLPACIQQFHFLRSLVVNDCPHLREIRGLPPNLEYFSAVKCKSLSPRGTSLLLNQGLYLGRSADFVMPGGRIPRWFEQRRRGETSISFWFSGTKFPAESLCLAILLKDHIPSLSLVNIFFRINGKQVSDKCSIMEQLLIFNMNSLSYLEGPPGDKGWNHALPHCENGWNHAEVSYEGVTDPTL 856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181421g00009 856 Gene3D Ribonuclease Inhibitor 550 726 IPR032675 -
Stsc181421g00009 856 Gene3D Ribonuclease Inhibitor 446 549 IPR032675 -
Stsc181421g00009 856 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 132 369 IPR027417 -
Stsc181421g00009 856 Gene3D - 2 129 IPR035897 -
Stsc181421g00009 856 PRINTS Disease resistance protein signature 167 182 - -
Stsc181421g00009 856 PRINTS Disease resistance protein signature 527 543 - -
Stsc181421g00009 856 PRINTS Disease resistance protein signature 243 257 - -
Stsc181421g00009 856 SUPERFAMILY L domain-like 442 718 - -
Stsc181421g00009 856 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 703 IPR044974 GO:0006952
Stsc181421g00009 856 ProSiteProfiles TIR domain profile. 22 136 IPR000157 GO:0007165
Stsc181421g00009 856 Gene3D - 290 359 IPR042197 -
Stsc181421g00009 856 SMART till_3 23 167 IPR000157 GO:0007165
Stsc181421g00009 856 Pfam TIR domain 23 125 IPR000157 GO:0007165
Stsc181421g00009 856 Pfam NB-ARC domain 149 291 IPR002182 GO:0043531
Stsc181421g00009 856 Gene3D - 130 289 IPR027417 -
Stsc181421g00009 856 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 122 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181421g00009 Stsc-Chr181421 34789 38701 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181421g00009 435 730 WRKY Transcription Factor Family AT5G45050 26.129 6.98e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181421g00009 - - aip:110272157 633.639