Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181418g00013 ATGGCAGGAGCTGCACCTGAGGGAACACAGTTTGATGCTCGTCAATTTGATGCTAAAATGAATGATTTACTCACAGCTGATGGACAGGACTTCTTCACATCATATGATGAAGTGTACGATAGCTTTGATGCTATGGGTTTGCAAGAGAATCTCCTCAGAGGCATTTATGCCTATGGTTTTGAAAAGCCATCAGCTATTCAGCAAAGGGGAATAGTCCCATTCTGCAAGGGACTTGATGTTATTCAACAGGCCCAATCTGGAACTGGAAAAACTGCAACTTTCTGCTCTGGAATCCTGCAGCAACTTGACTACAGCCTGACGGAATGCCAGGCCTTGGTTTTGGCACCAACCTGTGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGGGCACTTGGATATTATCTTGGTGTGAAGGTTTATGCTTGTGTGGGAGGAACCAGTGCTCGTGAAGATCAATGCATTGTAGCTAGCGGTGTTCACGTTGTTGTTGGTACTCCTGGTCTTGTCTTTGATATGCTGCGCAGACAGTCACTTCAGCCGGATCACATTAAAATGTTTGTGTTGGATGAAGCTGATGAAATGCTTTCAAGGGGTTTCAAAGACCAGATATACGATATATTCCGGTTGCTGCCATCTAAAATTCAGGTTGGAGTTTTCTCTGCCACAATGCCACCTGAGGTCCTTGAAATTTCCATTAGCATTCAGCCTCCCGCCAAATATAAAACTATAGTGCGTATTTTTAATGCCAAAAAAGGGGCGCGTGAGCGGTGGCGAGAAGAGGCGGCGGTGCAAGTTACAATGCGCGGCGACGCAACCGACTGGGACGAAAATGTGTACAGAGAACGCCTCCTCAAGGAGAGGGAGATCCAAACCCGAACCGTTTTCCGTACAGCTTGGGCTCCTTCTCCTCTAAACCCTAATCCTCACTCTTTTGTCGTTGCCTCCAGCGACGGTTCTGTCGCCTCCTACTCCATCCCTTCCTGCATCTCCAACCTTAAAAATAATACCGATGCCTATGCGGGTAGATTATTGGCTGAACCGGATTGCTTCTTTCATGGGCATGATGGACCTGCATATGATGTCAAATTCTATGGTGATGGTGAAGATGCTCTGTTGTTGAGTTGTGGTGATGATGGGTTCATTCGAGGATGGAGGTGGAAGGAACTTGCAAATTCAAATAGTGTTGATTCCACGCAAGGAAGCAATATCAAACCCATACTTGACTTGGTAAATCCTCAACACAAAGGTCCTTGGGGTGCACTTTCCCCTGTCCCTGAGAATAATGCTATTGCTGTTAATTCTCAGGGGGGATCTGTTTTCTCTGCTTCCGGTGATTCTTGTGCATATTGTTGGGATGTGGAAACTGGTAAAGTGAAAATGGTGTTTAAGGGGCACTCGGACTACTTGCACTGTATAGTTGCTCGCAACTCATCCAATCAGATCATAACTGGTTCAGAGGACAAGACTGCACGAATTTGGGATTGCAAAAGTGGAAAGTGTATCAAAGTCATTGATCCTTCAAAAGATTTGAACACAAAAGGATATGTTTCATGGGTTGGCTCTGTTGCATTAGATGCAAGTGAGAGCTGGTTGGCCTGCAGTAGTGGACGAAATATATCCATTTGGAACCTTCCTGCTTCAGAGTGCTTATCAAGGATTTCAACTCATGCTTCTGTGCAGGATATGATATTTGACAGCAACCAAATTTTGGCAGTTGGTGCAGATTCTCTACTCAATCGCTTTGACATGAATGGTGCAATCCTTTCGCAAATAAAGTGTGCGCCTTCGTCAGCTTTCTCTGTCTCCTTACATCCTGTAGGGGTTGTGGCAGTTGGAGGTTATGGATGCCTTGTAGATGTTATCTCACAATTTTGTAGCCATATGTGCACATTCCATTGCAAGTGCATTTAA 1911 0.4521 MAGAAPEGTQFDARQFDAKMNDLLTADGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYSLTECQALVLAPTCELAQQIEKVMRALGYYLGVKVYACVGGTSAREDQCIVASGVHVVVGTPGLVFDMLRRQSLQPDHIKMFVLDEADEMLSRGFKDQIYDIFRLLPSKIQVGVFSATMPPEVLEISISIQPPAKYKTIVRIFNAKKGARERWREEAAVQVTMRGDATDWDENVYRERLLKEREIQTRTVFRTAWAPSPLNPNPHSFVVASSDGSVASYSIPSCISNLKNNTDAYAGRLLAEPDCFFHGHDGPAYDVKFYGDGEDALLLSCGDDGFIRGWRWKELANSNSVDSTQGSNIKPILDLVNPQHKGPWGALSPVPENNAIAVNSQGGSVFSASGDSCAYCWDVETGKVKMVFKGHSDYLHCIVARNSSNQIITGSEDKTARIWDCKSGKCIKVIDPSKDLNTKGYVSWVGSVALDASESWLACSSGRNISIWNLPASECLSRISTHASVQDMIFDSNQILAVGADSLLNRFDMNGAILSQIKCAPSSAFSVSLHPVGVVAVGGYGCLVDVISQFCSHMCTFHCKCI 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181418g00013 636 CDD DEADc_EIF4A 44 231 - -
Stsc181418g00013 636 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 234 IPR027417 -
Stsc181418g00013 636 Pfam WD domain, G-beta repeat 458 494 IPR001680 GO:0005515
Stsc181418g00013 636 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 40 68 IPR014014 GO:0003724
Stsc181418g00013 636 SUPERFAMILY WD40 repeat-like 304 622 IPR036322 GO:0005515
Stsc181418g00013 636 Gene3D - 426 509 IPR015943 GO:0005515
Stsc181418g00013 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 462 494 - -
Stsc181418g00013 636 Pfam DEAD/DEAH box helicase 65 227 IPR011545 GO:0003676|GO:0005524
Stsc181418g00013 636 FunFam Eukaryotic initiation factor 4A-II 28 245 - -
Stsc181418g00013 636 SMART ultradead3 59 256 IPR014001 -
Stsc181418g00013 636 Gene3D - 510 617 IPR015943 GO:0005515
Stsc181418g00013 636 PANTHER THO COMPLEX SUBUNIT 6 HOMOLOG 267 634 IPR042626 -
Stsc181418g00013 636 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 187 195 IPR000629 -
Stsc181418g00013 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 462 503 IPR001680 GO:0005515
Stsc181418g00013 636 Gene3D - 243 422 IPR015943 GO:0005515
Stsc181418g00013 636 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 71 241 IPR014001 -
Stsc181418g00013 636 Gene3D - 30 242 IPR027417 -
Stsc181418g00013 636 SMART WD40_4 455 494 IPR001680 GO:0005515
Stsc181418g00013 636 SMART WD40_4 280 324 IPR001680 GO:0005515
Stsc181418g00013 636 SMART WD40_4 546 582 IPR001680 GO:0005515
Stsc181418g00013 636 SMART WD40_4 344 385 IPR001680 GO:0005515
Stsc181418g00013 636 SMART WD40_4 584 622 IPR001680 GO:0005515
Stsc181418g00013 636 SMART WD40_4 497 543 IPR001680 GO:0005515
Stsc181418g00013 636 SMART WD40_4 402 452 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181418g00013 Stsc-Chr181418 52647 65790 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181418g00013 1 231 Eukaryotic Initiation Factors Gene Family AT3G13920 85.776 5.13e-138 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181418g00013 - - gmx:100820024 600.512