Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181418g00008 ATGGGAAGATCAAGGTGCTTTTTGGACATTAGCATTGGAGAGGAATTAGAAGGAAGAATAGTGATCGAACTCTTCGATGACGTGGTTCCTAAAACCGCTGAGAACTTTAGGGCTCTCTGCATTGGCAACAAAGGCATTGCTCCTAACACCAATGTCCCCCTTCATTTCAAGGGTTCTTGCTTTCACCGTGTTATTAAGGGCTTTATGATCCAAGGAGGTGATATATCTGCTGGAGATGGTACTGGAGGAGAGTCCATTTATGGACTTAAGTTTGAAGATGAGAATTTTGAGTTGAAGCATGAAAGGAAAGGGATGTTATCAATGGCAAATTGTGGTCCCAATACAAATGGTTCTCAATTTTTTATCACAACTACCAGAACTCCTCATCTAGATGGTAAACATGTTGTCTTTGGGAAGGTAGTCAAAGGAATGGGAGTCGTCCGCTCAGTTGAGCATGTCACAACTGGAGATAATGACCGTCCTACACTTGATGTTAAAATCGTGGATTGTGGAGAAATTCCTGAAGGAGAAGATGATGGAATACTTGACTTTTTCAAGGACGGTGATACCTTCCCTGATTGGCCAGCAGACCTTGATGAGAGACCTGATGAACTTCAGTGGTGGATGAACGCAGTAGACTCCATTAAAGCTTTCGGAAATGGGTATTACAAGAAACAAGACTACAAAATGGCTCAAAGAAAGTATCGTAAGGCTTTGCGCTACTTGGATGTTTGTTGGGAGAAAGAAGGGATTGATGGAGAGAAAAGCGTAGCTTTGAGGAAAACCAAGTCTCAAATTTTTACAAATAGCTCCGCATGTAAATTAAAATTAGGAGATCTTAAAGGAGCATTATTTGATGCTGAGTTTGCACTGCGTGAAGAGGACAATAATGTCAAAGCATTATTCCGGCAAGGACAGGCACATATGGCACTCCATGACATTGATGCTGCAGTTGAAAGCTTTAAAAATGCACTGGTCTTGGAACCAAATGATGCTGGGATTAAGAAGGAACTGGCTGCTGCCAGGAAGAAGGTTGCTGATAGGCGCGACCAGGAGAAAAAGGCTTATAGCAAGATGTTTCAATAA 1086 0.4199 MGRSRCFLDISIGEELEGRIVIELFDDVVPKTAENFRALCIGNKGIAPNTNVPLHFKGSCFHRVIKGFMIQGGDISAGDGTGGESIYGLKFEDENFELKHERKGMLSMANCGPNTNGSQFFITTTRTPHLDGKHVVFGKVVKGMGVVRSVEHVTTGDNDRPTLDVKIVDCGEIPEGEDDGILDFFKDGDTFPDWPADLDERPDELQWWMNAVDSIKAFGNGYYKKQDYKMAQRKYRKALRYLDVCWEKEGIDGEKSVALRKTKSQIFTNSSACKLKLGDLKGALFDAEFALREEDNNVKALFRQGQAHMALHDIDAAVESFKNALVLEPNDAGIKKELAAARKKVADRRDQEKKAYSKMFQ 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181418g00008 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 61 73 IPR002130 GO:0000413|GO:0003755
Stsc181418g00008 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Stsc181418g00008 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 104 119 IPR002130 GO:0000413|GO:0003755
Stsc181418g00008 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 131 IPR002130 GO:0000413|GO:0003755
Stsc181418g00008 361 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 132 147 IPR002130 GO:0000413|GO:0003755
Stsc181418g00008 361 Gene3D Tetratricopeptide repeat domain 208 361 IPR011990 GO:0005515
Stsc181418g00008 361 SUPERFAMILY Cyclophilin-like 3 175 IPR029000 -
Stsc181418g00008 361 SUPERFAMILY TPR-like 208 359 IPR011990 GO:0005515
Stsc181418g00008 361 CDD cyclophilin_ABH_like 4 171 - -
Stsc181418g00008 361 FunFam Peptidyl-prolyl cis-trans isomerase D 1 178 - -
Stsc181418g00008 361 ProSiteProfiles TPR repeat profile. 298 331 IPR019734 GO:0005515
Stsc181418g00008 361 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 172 IPR002130 GO:0000413|GO:0003755
Stsc181418g00008 361 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 5 173 - -
Stsc181418g00008 361 SMART tpr_5 264 297 IPR019734 GO:0005515
Stsc181418g00008 361 SMART tpr_5 212 245 IPR019734 GO:0005515
Stsc181418g00008 361 SMART tpr_5 298 331 IPR019734 GO:0005515
Stsc181418g00008 361 Pfam Tetratricopeptide repeat 299 331 IPR013105 -
Stsc181418g00008 361 FunFam peptidyl-prolyl cis-trans isomerase D 210 361 - -
Stsc181418g00008 361 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 56 73 IPR020892 GO:0003755|GO:0006457
Stsc181418g00008 361 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 8 171 IPR002130 GO:0000413|GO:0003755
Stsc181418g00008 361 Gene3D - 1 179 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181418g00008 Stsc-Chr181418 33422 37310 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181418g00008 14 170 U-box Gene Family AT5G67530 43.671 3.45e-34 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181418g00008 K05864 - gmx:100804110 629.402