Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181418g00006 ATGGATCGACCTGGTGGTGGTGGTGCGGTGAATGTTGGTGTTGGAATGGATATGGTGATCATGCATGAGAGCGAAAGATATGAACTTGTTCGCCATATTGGCTCTGGCAATTTTGGGGTGGCAAGGCTTATGAGAGACAAGCACACTAATGAGCTTGTTGCTGTCAAATATATTGAGAGAGGTGATAAGATAGATGAAAATGTAAGAAGGGAAATTATAAATCACAGATCACTAAGGCATCCAAATATTGTTAGGTTCAAAGAGGTCATATTGACCCCTACGCATTTGGCTATTGTGATGGAATATGCTGCTGGTGGAGAGCTATTTGAGCGAATATCCAACGCAGGACGGTTCAATGAGGATGAGGCACGCTTCTTCTTTCAACAACTTATCTCAGGGGTTAGCTACTGTCATGCAATGCAAGTATGCCATCGTGACTTGAAGTTAGAGAACACATTACTAGATGGTAGTCCAGCACCTCGATTAAAGATATGTGATTTTGGGTATTCTAAGTCCTCAGTTCTTCATTCACAACCAAAATCTACAGTTGGTACCCCTGCATACATTGCTCCGGAAGTTCTACTCATGAAGGAATATGATGGCAAGATTGCAGATGTGTGGTCTTGTGGGGTGACCTTATATGTCATGTTGGTGGGCTCATATCCTTTTGAGGATCCAGATGAACCAAAAAATTTCCAGAAGACAATTCATAGGATTTTGAAAGTCCAGTACTCGGTTCCTGACAGTGTTAACATATCACCCGAATGCCGTCATCTGATCTCAAGAATCTTTGTTGCTGATCCTGCACAGAGAATAAACATGTCTGAGATTAGAAACCATCCGTGGTTTCTGAAGAACCTCCCAGCTGATCTCATAGTTGACTATACAAATAACCAGTTTGAGGAGCCTGAACAACCAGTGCAGAGCATTGAAGAAATCATGCAGTTAATTGCGGAGGCTACAATTCCCGCAGCCGGAACTCAGTCTCTGAACCAGTATCTTAATGGCAGCTTGGATATTGACGACATGGACGAGGACATAGAGATTGATGATCCCGACCTTGACATTGATAGCAGTGGAGAAATAGTTTATGCAATGTAA 1101 0.426 MDRPGGGGAVNVGVGMDMVIMHESERYELVRHIGSGNFGVARLMRDKHTNELVAVKYIERGDKIDENVRREIINHRSLRHPNIVRFKEVILTPTHLAIVMEYAAGGELFERISNAGRFNEDEARFFFQQLISGVSYCHAMQVCHRDLKLENTLLDGSPAPRLKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLLMKEYDGKIADVWSCGVTLYVMLVGSYPFEDPDEPKNFQKTIHRILKVQYSVPDSVNISPECRHLISRIFVADPAQRINMSEIRNHPWFLKNLPADLIVDYTNNQFEEPEQPVQSIEEIMQLIAEATIPAAGTQSLNQYLNGSLDIDDMDEDIEIDDPDLDIDSSGEIVYAM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181418g00006 366 ProSitePatterns Protein kinases ATP-binding region signature. 33 56 IPR017441 GO:0005524
Stsc181418g00006 366 Gene3D Phosphorylase Kinase; domain 1 9 102 - -
Stsc181418g00006 366 FunFam Serine/threonine-protein kinase SRK2E 103 291 - -
Stsc181418g00006 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 142 154 IPR008271 GO:0004672|GO:0006468
Stsc181418g00006 366 ProSiteProfiles Protein kinase domain profile. 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181418g00006 366 Gene3D Transferase(Phosphotransferase) domain 1 103 291 - -
Stsc181418g00006 366 PANTHER SERINE/THREONINE KINASE 25 312 - -
Stsc181418g00006 366 FunFam Serine/threonine-protein kinase SRK2E 18 102 - -
Stsc181418g00006 366 SMART serkin_6 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181418g00006 366 Pfam Protein kinase domain 27 283 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181418g00006 366 SUPERFAMILY Protein kinase-like (PK-like) 20 308 IPR011009 -
Stsc181418g00006 366 CDD STKc_SnRK2 26 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181418g00006 Stsc-Chr181418 25829 29331 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181418g00006 19 305 CBL-interacting serine-threonine protein kinases AT4G24400 40.728 2.18e-68 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Stsc181418g00006 Pkinase 1.3e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181418g00006 K14498 - gmx:100804702 631.328