Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181417g00006 ATGGCTACTACTATCCTTTGCCGCTTTGTTTTGGTCATTGTGATTGCCACCCTTTTTATTCCAAACTTTACTTGCGCCAAGAAATCCAAAATAATTGACATCAAAATGAACGTGATTGATCAATGTTGGAGATTGAATCCCCAATGGAGGAGCCAGCGAGCGCAACTCGCCAACTGCTCCATTGGCTATGCAGGAAAGATGATGAACAACATTGGCAATGACCTCATCCATTATGAAGTTACTGACCCTAGTGATGACCCCATAAACCCTAAGCTTGGTACCTTGCGTTACGGAGCTTCTATGATTCAACAAAAAGTTTGGATTACATTCAAAACAGATATGCAAATTACATTGGCCAAACCCCTCCTCATTAGTAGCTTTACCGCCATTGATGGTCGTGGAAGCAATGTCCACATTGCTCACAATGCATGCTTCATGATCTTCAAGGCAACGAATGTAATAATCCACAACATCCGCATCCATCATTGTAAATCACAAGGTCCTGGAATGGTGGTGGGTCCAAATGGGAAGGTAATTTCATTGGGTAAAGTTGATGGCGATGCAATCAGATTAGTGACTGCTTCAAAGATTTGGATTGATCATAATACACTTCATGATTGCCAAGATGGTCTTCTTGATGTTACACGGGGTTCCACTGATGTCACTATCTCTAACAACTGGTTCCGAAACCAAGATAAGGTTATGCTTCTTGGGCATGACGATGGATATATTAGAGACCAGAACATGAAAGTTACCGTTGTCTATAATCATTTTGGACCCAATTGTAACCAACGCATGCCAAGGATCCGCCATGGATATGCACATGTAGCAAACAATCTTTATCAGGGATGGATGCAATATGCTATTGGTGGAAGCAAAGAACCCAGCCTCAAAAGCCAATCTAACCTCTTCATAGCACCCAAATCCGGAAATAAGGAGGTGACATGGAGAAAAGGCAGTAAGGAAGAAAATGGGGATAGATGGGAATTCCATTCAGTGGGAGATGTTTTTGAAAATGGAGCATGTTTTACGGCAACAAAAGGAGGACGTGTGCCAAAACCCAATTACAGTGAGGAACAACGTTTTAAGGTTGTTGATGCCAAGTCTGTTAGACTTTTGACAAAATCATCTGGCGTGCTACGATGCAGAACTATATGCTGA 1161 0.4203 MATTILCRFVLVIVIATLFIPNFTCAKKSKIIDIKMNVIDQCWRLNPQWRSQRAQLANCSIGYAGKMMNNIGNDLIHYEVTDPSDDPINPKLGTLRYGASMIQQKVWITFKTDMQITLAKPLLISSFTAIDGRGSNVHIAHNACFMIFKATNVIIHNIRIHHCKSQGPGMVVGPNGKVISLGKVDGDAIRLVTASKIWIDHNTLHDCQDGLLDVTRGSTDVTISNNWFRNQDKVMLLGHDDGYIRDQNMKVTVVYNHFGPNCNQRMPRIRHGYAHVANNLYQGWMQYAIGGSKEPSLKSQSNLFIAPKSGNKEVTWRKGSKEENGDRWEFHSVGDVFENGACFTATKGGRVPKPNYSEEQRFKVVDAKSVRLLTKSSGVLRCRTIC 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181417g00006 386 SMART amb_all 113 310 IPR002022 -
Stsc181417g00006 386 Pfam Pectate lyase 125 304 IPR002022 -
Stsc181417g00006 386 PANTHER PECTATE LYASE 18-RELATED 33 383 IPR045032 GO:0030570
Stsc181417g00006 386 Gene3D - 36 381 IPR012334 -
Stsc181417g00006 386 PRINTS Pollen allergen Amb family signature 359 382 IPR018082 -
Stsc181417g00006 386 PRINTS Pollen allergen Amb family signature 287 306 IPR018082 -
Stsc181417g00006 386 PRINTS Pollen allergen Amb family signature 121 137 IPR018082 -
Stsc181417g00006 386 PRINTS Pollen allergen Amb family signature 185 206 IPR018082 -
Stsc181417g00006 386 PRINTS Pollen allergen Amb family signature 59 76 IPR018082 -
Stsc181417g00006 386 PRINTS Pollen allergen Amb family signature 328 352 IPR018082 -
Stsc181417g00006 386 PRINTS Pollen allergen Amb family signature 265 284 IPR018082 -
Stsc181417g00006 386 SUPERFAMILY Pectin lyase-like 34 381 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181417g00006 Stsc-Chr181417 17944 19510 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181417g00006 67 330 Polysaccharide Lyase AT5G09280 66.176 3.26e-140 399
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181417g00006 K01728 - gmx:100780437 630.557