Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181417g00005 ATGCGTCTCTTCTTCCTCTTCATCATCATCATCACCAACTCATCTCTGATAAAGGGACAGCAACCTTACATTGGTTTAGGGACAGTAGCATGTCCTAGAAGGGGTAACACAAAATCAATCCGAGGCTACACTTGCAACGGTTTCAACCACACTTGCCAAGCTTACCTCACATTCAGATCCCAGCCACTCTACAGTTCAGTCTCCACAATCTCCACTCTCTTAAACTCTGACCCTTCACAACTAGCTCTCATCAACTCCGTTTCCTTAAACGAAACCTTCGAACCAAACACGCTGGTCATTGTTCCCGTTAACTGCTCCTGTGCCTCCGAGTATTACCAATCAAACACCACCTATGTTGCTCACAATGCTGAAACCAACTTCTTGATTGCCAACAACACCTTCCAAGGACTCTCCACCTGTCAAGCTTTGGAGCACCAGAATGCCAACCCTTCTAACATCTACCCTGGAAGGCAACTTCTTGTTCCTCTTAGATGTGCTTGTCCCACAAGGAATCAAACTCTCAAAGGTGTTAGGTACCTCTTGAGTTACCTTGTTGATTGGGGTGATTCTATTTCTGCCATTAGTCAAATGTTCAATGTTACTACTCAGATCACTCTTGAGGCTAACTCCCTTACTATGATGAGTTCCCTCATCTATCCCTTTACAACTATTCTAGTCCCTCTTCATGATAAGCCCTTCAATCTTCGAACTTCTTCGCCGCCATCTCAACCACCTTCCTCTTCTTCTTCTTCTTCTGGTTCAGCAGATAAAAGCTCAAAGAAAACATGGGTTTATGTTATTGTTGGAGTTGTTGGTGGCTTTGCCTTAATATTTGTTACCTGTGCTGTCATTTTCTTCACATGCACTCGCAAAACTAAAAGGAAACAAGAGGCTGTTACAGTTTCCAAGAGTTTTGAGGCAACTGAGAAGCCACAAGGGAAGATCATGGAGCAAGAATCAGGAAAATTGTCAGAGATCATAGCTAGCATAGCTCAATCTTTCAAAGTGTACGATTTTGAGGAATTGCAGCGTGCAACTGACAACTTTAGCACAAGTTGCTGGATGAAAGGATCGGTTTACCGTGGAGTTATCAATGGTGATTTTGCAGCAATCAAGAAGGTAGAAGGAGATATCTCAAAGGAGATTCAAGTTCTGAACAAAGTCAACCATTCCAATGTTATACGCCTCTCCGGGGTCAGCTTCTACCATGGCCAATGGTATCTTGTTTATGAGTATGCTGCTAATGGAGCCTTGAGTGATTGGATCTACTTGGACAACATTGATGGCAAGTTTCTAAGTTGGAGGCAGAGGATTCAGATTGCATTGGATGTGGCCACAGGACTTGATTATCTTCACAGCTTCACTTCTCCTCCATACATTCACAAGGATCTCAATTGCAGCAACATTCTCTTGGACAGTGATTTAAGGGCAAAGGTTGCAAACTTTAGCCTTGCAAGGTCTGTGGAAGGAGGGAAAGGCCAATTTCCAATGACAAGGCATATTGTAGGGACAAGAGGTTACATGGCCCCTGAGTATTTAGAGAATGGTGTTGTATCCACAAAGCTTGATGTGTATGCATTTGGGGTTCTGGTGCTAGAAATCCTCACTGGAAAAGAGGTTGCTGAAATCTTGAATGAAGATGATAACAACAATAAGGGTTTGTCAAATGCTTTGAGTGTTATACTTGGTGAGGAAAGTGGGAAGGAGAGAGTGAAGGAGTTTATGTGTGCTTCTCTTCAAGGGAATTATCCATCAGAACTTGCTATGGTTGTGATAAGAATGATCCATAGTTGTATAAAGAAAGAGCCAGAAAATAGACCACAGATGCAGGAGATTGTTGCATCTCTGTCTAGAATACTGAACTCTTCATTGAATTGGGAAACCTCAGTGAGCCTCTCAGCATCCAAAAGCTTTTGA 1917 0.4278 MRLFFLFIIIITNSSLIKGQQPYIGLGTVACPRRGNTKSIRGYTCNGFNHTCQAYLTFRSQPLYSSVSTISTLLNSDPSQLALINSVSLNETFEPNTLVIVPVNCSCASEYYQSNTTYVAHNAETNFLIANNTFQGLSTCQALEHQNANPSNIYPGRQLLVPLRCACPTRNQTLKGVRYLLSYLVDWGDSISAISQMFNVTTQITLEANSLTMMSSLIYPFTTILVPLHDKPFNLRTSSPPSQPPSSSSSSSGSADKSSKKTWVYVIVGVVGGFALIFVTCAVIFFTCTRKTKRKQEAVTVSKSFEATEKPQGKIMEQESGKLSEIIASIAQSFKVYDFEELQRATDNFSTSCWMKGSVYRGVINGDFAAIKKVEGDISKEIQVLNKVNHSNVIRLSGVSFYHGQWYLVYEYAANGALSDWIYLDNIDGKFLSWRQRIQIALDVATGLDYLHSFTSPPYIHKDLNCSNILLDSDLRAKVANFSLARSVEGGKGQFPMTRHIVGTRGYMAPEYLENGVVSTKLDVYAFGVLVLEILTGKEVAEILNEDDNNNKGLSNALSVILGEESGKERVKEFMCASLQGNYPSELAMVVIRMIHSCIKKEPENRPQMQEIVASLSRILNSSLNWETSVSLSASKSF 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181417g00005 638 Gene3D Transferase(Phosphotransferase) domain 1 414 633 - -
Stsc181417g00005 638 Gene3D LysM domain 182 230 IPR036779 -
Stsc181417g00005 638 SUPERFAMILY Protein kinase-like (PK-like) 332 616 IPR011009 -
Stsc181417g00005 638 MobiDBLite consensus disorder prediction 235 257 - -
Stsc181417g00005 638 Pfam LysM domain 187 227 IPR018392 -
Stsc181417g00005 638 Pfam Protein kinase domain 366 614 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181417g00005 638 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 31 - -
Stsc181417g00005 638 ProSiteProfiles LysM domain profile. 181 226 IPR018392 -
Stsc181417g00005 638 ProSiteProfiles Protein kinase domain profile. 312 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181417g00005 638 Gene3D Phosphorylase Kinase; domain 1 321 412 - -
Stsc181417g00005 638 FunFam PTI1-like tyrosine-protein kinase 3 413 630 - -
Stsc181417g00005 638 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 4 629 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181417g00005 Stsc-Chr181417 14756 16874 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181417g00005 5 629 Receptor kinase-like Gene Family AT2G23770 45.182 7.27e-178 517
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc181417g00005 Pkinase 2.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181417g00005 - - gmx:100815842 874.004