Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181417g00004 ATGACCAGCATCCCAGCTCAATCACAGCAGATTAATGGAACAGACTTTTCATGCCCAGTGGATTCACCTTCTTCCTGTGAAACATATGTGACATACATTGCTCAATCTCCAAATTTATTGAGCCTTTCTAACATATCTGACATATTTGCCACCAGCCCTTTATCCATTGCAACAGCAAGTAACATAAGGAATGAAGATGACAAGCTGGTTCCAGGCCAAGTCTTACTGATACCTGTCACTTGTGGTTGCACTGGAAACCAATCCTTTGCCAATATCACCTACCAGATGAGGCAAGGTGATATGTATGACACAGTCTCACAAATTTCATTTGAGAATCTCACAAATTGGCGTGCAGTGAACCATTCAAACCCGGATTTGAATCCAGTTCTGTTGCCAATAGGAGTGAAAGTAGTGTTCCCTTTATTCTGCAGGTGCCCTTCAAAGAAGCAGTTACAGAAAGGGATAGAATATATGATCACCTACGTGTGGCAGCACAATGACACTGTTTCTTCTGTAGCAGCCAAGTTTGGTGCATCACCGGTGGACATATCAACTGAAAACAACTATGGTGGAAACTTCACAGCTGCAACCTATCTTCCAGTTTTGATTCCTGTGACAAGCTTGCCAGTTCTTGCTCAACCTGACCCTTCAAATGGAAGAAAGAGCAGCATTGGGATCCCCGTTATAATTGGTATTAGCCTGGCATTCATTCTTGTCATTGCTGTTATAGTAATATCATTGGTTTATGCTTATCATTATCAGAGAAAGAGAACTTTAAACAGGAGAGATTCATCTGCTGGGACAGCAGATAAGCTACTCTCTGGGGTTTCAGGCTATGTGAGTAAGCCAACCGTGTATGAAGCTGATGCGATTATCAAAGCCACCACGAACCTCAGCGAGCACTGCAAGATTGGGGACACAGTTTACAAGGCTAAAATAGAAGGCCAGGTCTTGGCAGTGAAAAAGGTGAATGAAGTTGTTTCTGAGGAGCTGAATGTTCTGCAGAAGGTGAATCATGGAAACCTGGTGAAACTGATGGGTGTATCTTCAGACAGTGATGGAAACCATTTCTTGGTTTATGAGTATGCTGATAACGGGTCCCTTGAGGAGTGGCTCTTCTCCAAGCTGTCTTCGAAGGCTTCGCTTACATGGTATCAGAGGATTAACATAGCATTGGATGTTGCCATGGGTCTGCAATACTTGCATGAGCACACTTATCCAAGAATAGTCCATAGGGACATCACAGCAAGTAACATCCTTCTTGACTCAAATTTCAAGGCCAAGATAGGGAACTTCTCTATGGCTAGAACTAGTACAAATCCCATGACTTGCAAGATCGATGTCTTTGCTTTCGGGGTTGTTCTGATTGAATTGCTTACAGGCAAGAAAGGCATGACAACAAAGGCAGATGGCGAGGTGGTAATGCAGTGGAAGCATGTTAGGAAGATATTTGAAGTGGAAGATGAAAAGGAAAAGGAGGAGTGTCTGAGAAGATGGATGGATCCTAAGCTAGAGAGCCTTTACCCTGTGGATTATGCTCTCAGCTTGGTCACATTGGCAGTGAATTGCACAGCCGATGTATCGTTGTCTAGACCAACCATGGCAGAAGTTGTTCTTGGCCTCTCCCTTCTCACTCAACCATCTCAAGCTGCACTAGAGAGATCGTTGACTTCTTCTGCGTTGGAGGCAGAGGTTACTCATGTGGCTACTCCCATAGCAGCACGTTAA 1728 0.4398 MTSIPAQSQQINGTDFSCPVDSPSSCETYVTYIAQSPNLLSLSNISDIFATSPLSIATASNIRNEDDKLVPGQVLLIPVTCGCTGNQSFANITYQMRQGDMYDTVSQISFENLTNWRAVNHSNPDLNPVLLPIGVKVVFPLFCRCPSKKQLQKGIEYMITYVWQHNDTVSSVAAKFGASPVDISTENNYGGNFTAATYLPVLIPVTSLPVLAQPDPSNGRKSSIGIPVIIGISLAFILVIAVIVISLVYAYHYQRKRTLNRRDSSAGTADKLLSGVSGYVSKPTVYEADAIIKATTNLSEHCKIGDTVYKAKIEGQVLAVKKVNEVVSEELNVLQKVNHGNLVKLMGVSSDSDGNHFLVYEYADNGSLEEWLFSKLSSKASLTWYQRINIALDVAMGLQYLHEHTYPRIVHRDITASNILLDSNFKAKIGNFSMARTSTNPMTCKIDVFAFGVVLIELLTGKKGMTTKADGEVVMQWKHVRKIFEVEDEKEKEECLRRWMDPKLESLYPVDYALSLVTLAVNCTADVSLSRPTMAEVVLGLSLLTQPSQAALERSLTSSALEAEVTHVATPIAAR 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181417g00004 575 Pfam Protein tyrosine and serine/threonine kinase 324 438 IPR001245 GO:0004672|GO:0006468
Stsc181417g00004 575 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 3 549 - -
Stsc181417g00004 575 Pfam LysM domain 41 78 IPR018392 -
Stsc181417g00004 575 ProSiteProfiles LysM domain profile. 30 77 IPR018392 -
Stsc181417g00004 575 Gene3D Transferase(Phosphotransferase) domain 1 440 550 - -
Stsc181417g00004 575 Gene3D Transferase(Phosphotransferase) domain 1 363 439 - -
Stsc181417g00004 575 FunFam Os07g0541700 protein 363 447 - -
Stsc181417g00004 575 ProSiteProfiles Protein kinase domain profile. 266 544 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181417g00004 575 Gene3D Phosphorylase Kinase; domain 1 275 362 - -
Stsc181417g00004 575 SUPERFAMILY Protein kinase-like (PK-like) 281 539 IPR011009 -
Stsc181417g00004 575 ProSitePatterns Tyrosine protein kinases specific active-site signature. 409 421 IPR008266 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181417g00004 Stsc-Chr181417 12813 14540 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181417g00004 60 544 Receptor kinase-like Gene Family AT3G21630 30.855 6.99e-70 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Stsc181417g00004 PK_Tyr_Ser-Thr 4.6e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181417g00004 - - gmx:100301877 783.097