Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181414g00010 ATGCAGTTTTTTGTGAGCAAAGCAAAAAAAAGCATAATCGTCGTCAGCAGAACGGCAGCCCACTTCTTTGACCTCGCCCCGATCTGCTCTTGTCTGCTGTTATGTGCCTCTCTCTGTACTCTCTCTCGCCGCTGCAAAGCAAAAAAACGCATCGGGAAGAAGGATATAGTGACACATGTATCTCCATGTTCCGATTTTAAGGATATAAAAAAGAAAAGATATCCCTTATTTTACGTAGGAAGAGTTAAAAAAACAATGGAAGAAGATAATTTGCAGTGGCAATGGTCCCTCAAAGACTTCGAGATCGGAAAACCTCTTGGTAGAGGAAAGTTCGGCAGAGTCTACGTCGCTAGAGAAGTCAAGAGCAAATATGTAGTTGCATTGAAGATTATATTCAAGGAACAAATTGAGAAGTACAGACTTAATCATCAGCTAGGGAGGGAGATGGAAATACAATCCAACCTTCACCACCCAAATATTCTACGACTATATGGCTGGTTTCATGATGCAGAGCGTGTTTTCTTGATTCTTGAATATGCTCACAACGGTGAGCTCTACAAGGAGCTTAGAAAAAGAGGCCACCTCACTGAGATGCAGGCAGCCACGTATATTTTGAGTCTCACAAAGGCATTGGCATATTGTCATGAGAAGCATGTTATTCATAGGGATATCAAACCAGAAAATCTGTTGCTTGACCATGAGGGTCGTCTTAAAATTGCAGACTTTGGTTGGTCTGTACAATCTAGAAGCAAGAGACATACTATGTGCGGTACATTGGACTACTTAGCTCCCGAAATGGTAGAAAACAAAGCTCATGATTATGCAGTCGATAACTGGACTCTGGGTATCCTTTGTTATGAGTTCCTCTATGGCGCTCCTCCATTTGAGGCTGAGAGTCAAGCTGATACCTTCAAAAGGATCATGAAGGTTGACCTATCCTTCCCTGCTACGCCATTTGTTTCTTTAGAAGCAAAGAATCTGATTAGTCGGCTCTTGGTAAAAGACTCCTCAAGAAGGCTCTCGCTTCAGAAAATAATGGAGCATTCGTGGATAGTCAAGAACGCGAATCCCATGGGTAGCTGCAACTAG 1089 0.4252 MQFFVSKAKKSIIVVSRTAAHFFDLAPICSCLLLCASLCTLSRRCKAKKRIGKKDIVTHVSPCSDFKDIKKKRYPLFYVGRVKKTMEEDNLQWQWSLKDFEIGKPLGRGKFGRVYVAREVKSKYVVALKIIFKEQIEKYRLNHQLGREMEIQSNLHHPNILRLYGWFHDAERVFLILEYAHNGELYKELRKRGHLTEMQAATYILSLTKALAYCHEKHVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPEMVENKAHDYAVDNWTLGILCYEFLYGAPPFEAESQADTFKRIMKVDLSFPATPFVSLEAKNLISRLLVKDSSRRLSLQKIMEHSWIVKNANPMGSCN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181414g00010 362 SMART serkin_6 100 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181414g00010 362 CDD STKc_Aurora 99 352 - -
Stsc181414g00010 362 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 93 361 IPR030616 GO:0004672
Stsc181414g00010 362 Pfam Protein kinase domain 100 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181414g00010 362 FunFam Serine/threonine-protein kinase ark1 92 361 - -
Stsc181414g00010 362 Gene3D Transferase(Phosphotransferase) domain 1 184 360 - -
Stsc181414g00010 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 219 231 IPR008271 GO:0004672|GO:0006468
Stsc181414g00010 362 FunFam Aurora kinase A 92 183 - -
Stsc181414g00010 362 ProSiteProfiles Protein kinase domain profile. 100 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Stsc181414g00010 362 SUPERFAMILY Protein kinase-like (PK-like) 84 355 IPR011009 -
Stsc181414g00010 362 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Stsc181414g00010 362 ProSitePatterns Protein kinases ATP-binding region signature. 106 133 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181414g00010 Stsc-Chr181414 56005 60095 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181414g00010 85 356 CBL-interacting serine-threonine protein kinases AT5G25110 39.568 1.77e-62 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Stsc181414g00010 Pkinase 1.2e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181414g00010 K08850 - gmx:100800111 508.449