Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181412g00005 ATGTACACCACTACTCTTATCCCTCCTCCTTCTACTTCTTCTCTTCCTTTCCACTCGCCAATTCACACATTCCATCATGCACCTCTCTTCTCGCGGAACCACCATCTCCACCATTGCTCATCACTTTCTGCTGCAACCAGCACCACTCAACTCTCAACCGTTCCATGGGGCTGCGATTCTGATTCCTTGGAGAACGCATCTGCCTTGCAGAAATGGCTCTCCGATTCGGGGCTTCCCCCGCAGAAGATGAGCATTCAGCGAGTTGACGTCGGAGAGAGAGGCCTCGTCGCCTTAAAGAACATCAGGAAAGGGGAGAAGCTCCTCTTCGTCCCTCCCTCTCTCGTCATCACTCAAGATTCCGAGTGGACGTGCCCGGAAGCTGGTGCAATTTTGAAGAAGAATTCGGTGCCGGATTGGCCATTGCTTGCAACTTATCTCATCAGTGAAGCCAGCTTCATGAAATCCTCAAGATGGAGCAACTATATTTCAGCCCTACCTCGCCAGCCTTATTCACTTCTTTACTGGTCACAAGCAGAACTAGATCGCTATTTGGAAGCTTCACAGATTAGGGAGAGAGCAGTTGACAGGATTAATAATGTTATTGGAACATACAATGATTTGAGGCTCAGAATATTTTCCCAACACCCCGATTTGTTCCCTGAAGAGTTGTTCAACATTGAGTCCTTCAAATGGTCATTTGGCATTCTTTTTTCTCGTTTGGTTCGGTTACCCTCAATGGATGGAAGGGTTGCCTTGGTTCCATGGGCAGATATGTTGAATCATAGTTGTGAAGTGGATACCTTTTTGGATTACGATAATTCGTCAAAGGGAATTGTCTTTACTACAGATCGGCCATATCAACCAGGTGAGCAGGTGTTTATTTCATATGGAAAAAAATCGAATGGGGAGCTTCTGTTATCATATGGGTTTGTTCCAAGGGAAGGTGCAAATCCTCGTGATTCAGTTGAGTTGTCAGTGTCACTCAAGAAATCTGATAAATCCTACAAGGACAAATTAGAACTCTTGAAGAAGTATGGATTATCAGCATCTCAATGTTTTCCAGTACAGATTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGTCCTCCAAGCATGAGAGCACAATTTGAAGAGATGGCTGCGGCAGCATCGAATAAAACTAACACCAAGAAAGATTTGAGATATCCTGAAATAGAGGAGGAAGCATTGCAGTTCATACTTGACAGTTGTGAATCCAGTATATCAAAATACAACAATTTCTTAGAGGCAAGTGGATCTCTGGATCTAGATGTGACTTCTCCGAAACAACTCAACCGAAGACTCTTTTTGAAACAACTCGCAGTGGACTTGTGTACAAGCGAGCGAAGGATATTATTCCGTACTCAATATATACTGAGGAGAAGACTCAGGGATATGAGAGCTGGTGAATTAAGAGCTTTAAAAATCTTTGATGGGCTACGGAATCTTTTCCAATGA 1491 0.438 MYTTTLIPPPSTSSLPFHSPIHTFHHAPLFSRNHHLHHCSSLSAATSTTQLSTVPWGCDSDSLENASALQKWLSDSGLPPQKMSIQRVDVGERGLVALKNIRKGEKLLFVPPSLVITQDSEWTCPEAGAILKKNSVPDWPLLATYLISEASFMKSSRWSNYISALPRQPYSLLYWSQAELDRYLEASQIRERAVDRINNVIGTYNDLRLRIFSQHPDLFPEELFNIESFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVDTFLDYDNSSKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPREGANPRDSVELSVSLKKSDKSYKDKLELLKKYGLSASQCFPVQITGWPLELMAYAYLAVSPPSMRAQFEEMAAAASNKTNTKKDLRYPEIEEEALQFILDSCESSISKYNNFLEASGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILFRTQYILRRRLRDMRAGELRALKIFDGLRNLFQ 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181412g00005 496 Gene3D - 316 485 IPR036464 -
Stsc181412g00005 496 FunFam Rubisco methyltransferase family protein 316 479 - -
Stsc181412g00005 496 SMART set_7 81 303 IPR001214 GO:0005515
Stsc181412g00005 496 SUPERFAMILY SET domain 65 313 IPR046341 -
Stsc181412g00005 496 Pfam SET domain 93 297 IPR001214 GO:0005515
Stsc181412g00005 496 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 63 430 - -
Stsc181412g00005 496 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 327 492 IPR036464 -
Stsc181412g00005 496 PIRSF RMT_SET 5 493 IPR011192 GO:0009507|GO:0030785
Stsc181412g00005 496 ProSiteProfiles SET domain profile. 81 297 IPR001214 GO:0005515
Stsc181412g00005 496 Pfam Rubisco LSMT substrate-binding 330 463 IPR015353 -
Stsc181412g00005 496 CDD SET_RBCMT 80 311 IPR044431 GO:0016279|GO:0018022
Stsc181412g00005 496 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 49 310 - -
Stsc181412g00005 496 Gene3D set domain protein methyltransferase, domain 1 31 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181412g00005 Stsc-Chr181412 38171 42582 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Stsc181412g00005 SET 2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181412g00005 - - gmx:100803319 783.482