Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181412g00004 ATGGATGGTGTGCTGTATTGCAAGACACACTTTGAACAGCTTTTCAAGGAATCTGGAAATTTTAGTAAGAACTTTCAAACAGCAAAGTCTGCTGATAAATCAAATGAAGGGAACAAGGCTCCAAGCAGACTCTCATCCATGTTTAGTGGAACTCTGGACAAATGCTCAGTTTGTGGAAAAACAGTGTATCCACTGGAAAAGATGTCACTGGAAGGAGAGTGCTATCACAAGACATGCTTTAGGTGTGCTCATTCAGGATGTCCTCTCACACACTCCAACTATGCTGCCTTGGATGGTGTCCTCTATTGCAAGCACCATTTCCAGCAGCTCTTCATGGAGAAAGGTAACTACAGCCATGTACTTCAGGCTGCTAAGGAAAAGAAGGTCAATGCTACTTCTCCTTCTGAACCTGCTGAAGAGTCCGAGAAGCCGGATTCCGAGGAGAATAAAGAAGAAGAAGAAGCAGCACCTAAGGAGGAAGAAGAAGAACCAAAGGCAGAAGAAGAGTCCAAGGAAGAGGATCCTAATGAAGAGGAAAAGAAAGATGAGGACACTTAG 558 0.4391 MDGVLYCKTHFEQLFKESGNFSKNFQTAKSADKSNEGNKAPSRLSSMFSGTLDKCSVCGKTVYPLEKMSLEGECYHKTCFRCAHSGCPLTHSNYAALDGVLYCKHHFQQLFMEKGNYSHVLQAAKEKKVNATSPSEPAEESEKPDSEENKEEEEAAPKEEEEEPKAEEESKEEDPNEEEKKDEDT 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181412g00004 185 PANTHER OS06G0237300 PROTEIN 1 48 - -
Stsc181412g00004 185 SMART lim_4 54 106 IPR001781 -
Stsc181412g00004 185 Pfam LIM domain 55 110 IPR001781 -
Stsc181412g00004 185 Coils Coil 149 169 - -
Stsc181412g00004 185 Gene3D Cysteine Rich Protein 51 119 - -
Stsc181412g00004 185 ProSiteProfiles LIM domain profile. 53 113 IPR001781 -
Stsc181412g00004 185 MobiDBLite consensus disorder prediction 145 185 - -
Stsc181412g00004 185 FunFam LIM domain and actin-binding 1 49 119 - -
Stsc181412g00004 185 MobiDBLite consensus disorder prediction 127 185 - -
Stsc181412g00004 185 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 47 80 - -
Stsc181412g00004 185 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 81 120 - -
Stsc181412g00004 185 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181412g00004 Stsc-Chr181412 23490 24362 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Stsc181412g00004 LIM 2.6e-10 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181412g00004 - - gmx:100779513 245.358