Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Stsc181412g00002 ATGGGAAGGAAACCTTGCTGTGAGAAGAAGGGTTTGAAGAAAGGTCCATGGACTGCTGAAGAAGATGAAATCCTTTCTAACTACATCAAAAACAATGGTGGCCATGGTAGCTGGCGTTCTCTCCCTAAGATAACAGGACTTCTTCGTTGTGGGAAAAGTTGCAGGCTTAGGTGGACAAACTATCTTAGACCTGACATTAAAAGGGGTCCCTTTACTTCTGAGGAAGAAAAACTTGTCATACAACTTCATGGCATCCTAGGAAATAGGTGGGCTGCTATTGCTTCTCAGTTACCAGGAAGAACAGATAATGAGATAAAGAACTTGTGGAACACACACTTGAAGAAGCGCCTCAAGAACATGGGAATCGATCCGAAGACACACGAGTCGGTTGCCTCGCCGCATTACCCCTTCGACAAGGCACACTCCTCGTCGGTTTCCACGCGACACATGGCTCAGTGGGAGAGTGCTAGGCTTGAAGCAGAGGCAAGGCTCTCAACAGAATCATCAAAATTCAACACCAATAACAACAACAAGAATAATGCTTCTTCCCTCGGCGAAGGCAAGAGTACTAACGAATCCGATTACTTCCTCCGGATTTGGAACTCGGAAGTAGGCGAGGCGTTTCGCAGCGTTGGTAAATCGGATAACAAAGGCGGATGCTGCCAGAGTGATAGTCCTGTTTCAGCAGGATCATGTTCTAACAAATGTGAATCATCATCAGTGGCCCTAAACCAATCAGGTACCTCAAACAATGGAAGTGGAATGAATAATGATCATGTGAAGGAAGAAGAGTTAGTATTATGTGCTGAAGAAGAAGAAGAAGGTATGGTTGTTTATCATGCTTCTGATTCATCATGCTCTAATGAATTGGAAGATTCATCTGATACTGCATTGCAGCTATTGTTAGATTTCCCTATAAACAATGACATGAGCTTCTTAGAGGGAAACTCTTTTGATTGCCACATTTAA 969 0.4376 MGRKPCCEKKGLKKGPWTAEEDEILSNYIKNNGGHGSWRSLPKITGLLRCGKSCRLRWTNYLRPDIKRGPFTSEEEKLVIQLHGILGNRWAAIASQLPGRTDNEIKNLWNTHLKKRLKNMGIDPKTHESVASPHYPFDKAHSSSVSTRHMAQWESARLEAEARLSTESSKFNTNNNNKNNASSLGEGKSTNESDYFLRIWNSEVGEAFRSVGKSDNKGGCCQSDSPVSAGSCSNKCESSSVALNQSGTSNNGSGMNNDHVKEEELVLCAEEEEEGMVVYHASDSSCSNELEDSSDTALQLLLDFPINNDMSFLEGNSFDCHI 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Stsc181412g00002 322 MobiDBLite consensus disorder prediction 164 189 - -
Stsc181412g00002 322 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Stsc181412g00002 322 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Stsc181412g00002 322 FunFam Myb transcription factor 11 68 - -
Stsc181412g00002 322 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Stsc181412g00002 322 MobiDBLite consensus disorder prediction 124 152 - -
Stsc181412g00002 322 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Stsc181412g00002 322 Gene3D - 11 68 - -
Stsc181412g00002 322 CDD SANT 16 62 IPR001005 -
Stsc181412g00002 322 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Stsc181412g00002 322 MobiDBLite consensus disorder prediction 165 189 - -
Stsc181412g00002 322 Gene3D - 70 134 - -
Stsc181412g00002 322 SMART sant 67 115 IPR001005 -
Stsc181412g00002 322 SMART sant 13 64 IPR001005 -
Stsc181412g00002 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Stsc181412g00002 322 FunFam MYB transcription factor 70 117 - -
Stsc181412g00002 322 CDD SANT 70 113 IPR001005 -
Stsc181412g00002 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 243 - -
Stsc181412g00002 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Stsc181412g00002 Stsc-Chr181412 17422 19355 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Stsc181412g00002 1 316 MYB Transcription Factor Family AT3G61250 59.561 2.61e-122 351
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Stsc181412g00002 Myb_DNA-binding 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Stsc181412g00002 K09422 - gmx:100816569 421.009